Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0228
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34040| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_55691| Best HMM Match : Ribosomal_L10e (HMM E-Value=6.5)            28   6.0  
SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_34040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -2

Query: 623 DQCYRNELRFSPKLNMAHLIILIMKINCIEAFPNNVQYQQNFMGIR*FYSDILF 462
           +QC  N    S  + +  +I++I+ IN I    +   Y++NF+ +R +Y  I F
Sbjct: 203 NQCNENSAILSSIIIIIIIILIIININIIITITSTTTYEENFVVLRDWYRGIFF 256


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/102 (18%), Positives = 43/102 (42%)
 Frame = +3

Query: 273 VLSVFFYTNRKAFMCVYSH*NIL*II*VLNFQRSHFCFLSNQYIQIFFWLCTHSQLFLCL 452
           +L+V      K  + +  + + L  + ++N  +     ++   +     + TH  L + +
Sbjct: 313 LLTVIINNTHKLLIIIIINTHKLLTVIIINTHKLLIVIINTHKLLTVITINTHKLLIVII 372

Query: 453 VTIKKNIRIELSNSHKVLLILNIIWKCLDTINFHYQYYKMSH 578
           +   K + + + N+HK+L ++    K L  I  H Q     H
Sbjct: 373 INTHKLLTVIIINNHKLLTVIINTHKLLIVITTHPQVTHRYH 414


>SB_55691| Best HMM Match : Ribosomal_L10e (HMM E-Value=6.5)
          Length = 189

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 453 VTIKKNIRI-ELSNSHKVLLILNIIWKCLD-TINFHYQYYKMSHIEFRG 593
           V IK+++R+ E SNS  VLL+      C   ++ FH  Y + +   FRG
Sbjct: 125 VPIKRSLRVDEGSNSQPVLLL-----SCTHLSVRFHVAYQRKNEFNFRG 168


>SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1022

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 423 CTHSQLFLCLVTIKKNIRIELSNSHKVL 506
           C H  +FLC   +K + R+ +   H++L
Sbjct: 498 CAHCSVFLCSFCVKAHRRMNILKDHEIL 525


>SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 168 QNVYSIINGLQSINGQKCHHHLLQIHRSY 82
           Q+  +I++G   IN   CHHH +  H  +
Sbjct: 30  QSAMTIVSGTLCINHVTCHHHHIHHHHRH 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,942,613
Number of Sequences: 59808
Number of extensions: 368445
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)