Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0228
         (672 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    32   2.1  

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/76 (21%), Positives = 35/76 (46%)
 Frame = +3

Query: 309 FMCVYSH*NIL*II*VLNFQRSHFCFLSNQYIQIFFWLCTHSQLFLCLVTIKKNIRIELS 488
           +MC + H  +   I V  +   H C   N Y+ I+ ++ T  Q+++ + T+       + 
Sbjct: 86  YMCAHIHMCVYTYIYVYIYTHIHICVHINMYVSIYVYIYTCIQIYIYMYTLYVCTYTYMC 145

Query: 489 NSHKVLLILNIIWKCL 536
               + +  +II+ C+
Sbjct: 146 TYIHICIHTSIIYVCV 161


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,022,602
Number of Sequences: 237096
Number of extensions: 1749249
Number of successful extensions: 6865
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6858
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)