Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0228
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +3

Query: 399 YIQIFFWLCTHSQLFLCLVTIKKNIRI 479
           ++ +  W+CT S L LC +++ + + +
Sbjct: 141 WLAVDVWMCTASILNLCAISLDRYLAV 167


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 387 LSNQYIQIFFWLCTHSQLFLCLVTIKKNIRI 479
           L + ++ +   LCT S L LC ++I + + +
Sbjct: 110 LCDSWVSLDILLCTASILSLCAISIDRYLAV 140


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 429 VYIAKRIFEYIDLIRNKNGFFENL 358
           +YIA  I +Y  L+RN++ +  +L
Sbjct: 415 MYIAFIILQYAGLLRNRSEYLNHL 438


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 384 FLSNQYIQIFFWLCTHSQLFLCLVTIKKNIRIELSNSHKVLLILNIIWKCLDTINFHYQY 563
           F+ N ++   F++      F    T  + IRI  S S    + L I   C   + +    
Sbjct: 89  FIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMD 148

Query: 564 YKMSHIE 584
            ++ HIE
Sbjct: 149 RQLCHIE 155


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 384 FLSNQYIQIFFWLCTHSQLFLCLVTIKKNIRIELSNSHKVLLILNIIWKCLDTINFHYQY 563
           F+ N ++   F++      F    T  + IRI  S S    + L I   C   + +    
Sbjct: 89  FIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMD 148

Query: 564 YKMSHIE 584
            ++ HIE
Sbjct: 149 RQLCHIE 155


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 384 FLSNQYIQIFFWLCTHSQLFLCLVTIKKNIRIELSNSHKVLLILNIIWKCLDTINFHYQY 563
           F+ N ++   F++      F    T  + IRI  S S    + L I   C   + +    
Sbjct: 28  FIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMD 87

Query: 564 YKMSHIE 584
            ++ HIE
Sbjct: 88  RQLCHIE 94


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 441 TIGNVYIAKRIFEYID 394
           TIG +  A  IFEY+D
Sbjct: 494 TIGILMDAPHIFEYVD 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,124
Number of Sequences: 438
Number of extensions: 3744
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)