Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0228
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    28   4.9  
At2g07280.1 68415.m00835 hypothetical protein                          27   8.6  

>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +3

Query: 354 VLNFQRSHFCFLSNQYIQIFFWLCTHSQLFLCLVTIKKNIRIELSNSHK 500
           ++ ++R   C L    +   F+ C+     +C+  +K+ + I  + SHK
Sbjct: 79  IIGYRRRDQCCLCRYKLLDMFYNCSRCMFEVCMACLKRPLLIYKTTSHK 127


>At2g07280.1 68415.m00835 hypothetical protein
          Length = 401

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 232 HTIMNQYTLFLVCKC 276
           HTI N YTLFL C C
Sbjct: 356 HTIPNTYTLFLHCFC 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,591
Number of Sequences: 28952
Number of extensions: 263951
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)