Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0227
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    70   3e-13
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    29   0.56 
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    29   0.98 
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    25   9.1  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   9.1  
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    25   9.1  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
 Frame = +2

Query: 2   IEEVNMIKEDGTVIHFNNPKPQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRL 181
           I+EVNM KEDG VI+F  P   +SL   T AI G  E K  +E+LPGIL+ LGP+ L  L
Sbjct: 56  IQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTAL 115

Query: 182 KRIASSVAAPK------PLEEDDEVPNLV 250
           +++A  +   +         +D E+P+LV
Sbjct: 116 RQMAEQLKVSEGEKGADAQADDGEIPDLV 144


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 390 FAHLHVKGFRSHLCLKRMIFTFISLRSWVYELHHVL 497
           + H++VK  +S  C+ +   + IS   W+ ELH +L
Sbjct: 441 YVHIYVKSSKSWRCMSQTHVSSISNLVWLNELHQLL 476


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 226 FLEWLRRGNTRRNPFQSVQAVGSELAEDT 140
           F++WL  GN+ R PF       SE  E+T
Sbjct: 126 FVDWLGMGNSSRPPFDIKGQTASEKVEET 154


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -3

Query: 274 VLRLRQSADEVRYLVV-FLEWLRRGNTRRNPFQSVQAVGSELAEDTREHLCGLLILPVSG 98
           VL +R++  E R   +        G++RR   QS  A    ++ED +  +       ++G
Sbjct: 213 VLNIRRAEHEARLAELNSASTNEEGSSRRRKEQSSSAAAKNISEDAQNRMTNATASIMAG 272

Query: 97  NRERVRGQRRLWL 59
           +     G++  W+
Sbjct: 273 SALPSGGKKYSWM 285


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 417 RSHLCLKRMIFTFI 458
           R +LC+KR+I+TFI
Sbjct: 88  RVNLCIKRLIYTFI 101


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 527 GDTKFLILSDGSGNRGSPIQMQLFLIDHQ 613
           GD+ FLIL +G+ +  SP Q+  F + +Q
Sbjct: 148 GDSGFLILRNGAIHYASPAQVLQFNMPYQ 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,512
Number of Sequences: 5004
Number of extensions: 54994
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)