Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0227
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 75 5e-14
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 73 2e-13
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 43 2e-04
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 29 3.1
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 28 7.2
10_08_0283 - 16467578-16467631,16467700-16467800,16467987-164680... 28 9.5
10_08_0279 - 16447761-16447814,16447883-16447983,16448170-164482... 28 9.5
08_02_0321 - 15761468-15761512,15761573-15761673,15761854-157619... 28 9.5
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 75.4 bits (177), Expect = 5e-14
Identities = 40/94 (42%), Positives = 60/94 (63%), Gaps = 11/94 (11%)
Frame = +2
Query: 2 IEEVNMIKEDGTVIHFNNPKPQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRL 181
IEEVN+ K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L
Sbjct: 494 IEEVNIFKDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNL 552
Query: 182 KRIA-----------SSVAAPKPLEEDDEVPNLV 250
+R+A + +A ++DD+VP LV
Sbjct: 553 RRLAEQFQKQVPGAEAGASAGNAQDDDDDVPELV 586
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/78 (44%), Positives = 51/78 (65%)
Frame = +2
Query: 2 IEEVNMIKEDGTVIHFNNPKPQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRL 181
IEEVN+ K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L
Sbjct: 55 IEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNL 113
Query: 182 KRIASSVAAPKPLEEDDE 235
+R+A P +E
Sbjct: 114 RRLAEQFQKQAPGASGEE 131
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 43.2 bits (97), Expect = 2e-04
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = +2
Query: 2 IEEVNMIKEDGTVIHFNNPKPQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRL 181
IEEVN+ K+D VI F NPK + ++LPGI++QLGPD + L
Sbjct: 46 IEEVNIFKDD-LVIQFVNPK-------------------ELQDVLPGIINQLGPDNMEHL 85
Query: 182 KRI---------ASSVAAPKPLEEDDEVPNLV 250
KRI A+ A E DD+VP LV
Sbjct: 86 KRIAEEMQKQVAAAGATAQAKEENDDDVPELV 117
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 174 FKPSGPSWLRIPGSISVVCLFSPCPVIANVFAAS 73
F P GP W + PGS + +PCP A++F++S
Sbjct: 207 FYPLGPVW-QPPGSSTSKAPSAPCPPSASLFSSS 239
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 50 NNPKPQASLAAN---TFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPL 220
N P+ S AN + ++T + E + TE + + LNR+ + V P PL
Sbjct: 570 NQPRSLVSSEANVQRSASMTRNNERIRPTESVNP--KDMSLSLLNRITTGNNVVGVPGPL 627
Query: 221 EEDDEVPNLVGTLTKPQ 271
E + P L G +PQ
Sbjct: 628 ESPEIKPRLFGVTAEPQ 644
>10_08_0283 -
16467578-16467631,16467700-16467800,16467987-16468083,
16468793-16468864,16468964-16469086,16469173-16469255,
16469394-16469448
Length = 194
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 42 YTLTTRSHKRRWPRTRSRL 98
YTLTT +++RRW + + RL
Sbjct: 147 YTLTTGANERRWEKIKDRL 165
>10_08_0279 -
16447761-16447814,16447883-16447983,16448170-16448266,
16448976-16449047,16449147-16449269,16449356-16449438,
16449577-16449631
Length = 194
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 42 YTLTTRSHKRRWPRTRSRL 98
YTLTT +++RRW + + RL
Sbjct: 147 YTLTTGANERRWEKIKDRL 165
>08_02_0321 -
15761468-15761512,15761573-15761673,15761854-15761950,
15762671-15762742,15762838-15762960,15763047-15763129,
15763269-15763410,15763496-15763654
Length = 273
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 42 YTLTTRSHKRRWPRTRSRL 98
YTLTT +++RRW + + RL
Sbjct: 229 YTLTTGANERRWEKIKDRL 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,383,988
Number of Sequences: 37544
Number of extensions: 353450
Number of successful extensions: 837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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