Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0227
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)                   48   1e-05
SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)                  28   9.6  
SB_26065| Best HMM Match : Peptidase_A17 (HMM E-Value=6.5e-19)         28   9.6  
SB_3341| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  

>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
          Length = 98

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +2

Query: 2   IEEVNMIKEDGTVIHFNNPKPQASLAA 82
           IEEVNMIKEDGTVIHFNNPK +    A
Sbjct: 60  IEEVNMIKEDGTVIHFNNPKAEMGSGA 86


>SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 268 RLRQSADEVRYLVVFLEWLRRGNTRRNPFQSVQAVGSELAEDTREHL 128
           RLR +A   +   + LE ++R  TR+  F     VG+++A+ T EH+
Sbjct: 455 RLRDNASSAQ--AILLEIVKRKVTRKATFAVGLQVGTDIADLTSEHI 499


>SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 161  PDGLNRLKRIASSVAAPKPLEEDDEVPNLVGTLTKP 268
            P G  RL R+ + +A+P  L    EV    GTL +P
Sbjct: 941  PRGKWRLGRVLAPIASPDGLVRSAEVATTKGTLIRP 976


>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
          Length = 970

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 146 LSQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGTLTKP 268
           L+ +G D ++ LK +AS++        DDE+P ++GTL  P
Sbjct: 706 LTLIGSD-VSSLKSVASTLR--DQCRTDDEIPGMIGTLLFP 743


>SB_26065| Best HMM Match : Peptidase_A17 (HMM E-Value=6.5e-19)
          Length = 317

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 161 PDGLNRLKRIASSVAAPKPLEEDDEVPNLVGTLTKP 268
           P G  RL R+ + +A+P  L    EV    GTL +P
Sbjct: 269 PRGKWRLGRVLAPIASPDGLVRSAEVATTKGTLIRP 304


>SB_3341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 478 YTQERNEIKVKIILLRHRWLRKPLTCR*AN*NYTCG*FNQF 356
           YT E +E K K   L  +W+   L+   AN  Y CG  N F
Sbjct: 330 YTPEVSEEKRKRRRLERKWVSTGLSTDRANYAYQCGVVNNF 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,480,268
Number of Sequences: 59808
Number of extensions: 411437
Number of successful extensions: 1050
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)