Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0227
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...   117   1e-26
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    29   4.9  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    28   8.5  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score =  117 bits (281), Expect = 1e-26
 Identities = 55/86 (63%), Positives = 68/86 (79%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   IEEVNMIKEDGTVIHFNNPKPQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRL 181
           IEEVNMIK+DGTVIHFNNPK Q S+ ANTF++TG  +NKQ TEMLPGIL+QLGP+ L  L
Sbjct: 61  IEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHL 120

Query: 182 KRIASSVA--APKPLEEDDEVPNLVG 253
           K++A++V    P    ED++VP LVG
Sbjct: 121 KKLANNVTKLGPDGKGEDEDVPELVG 146


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
           protease protein39 protein.
          Length = 951

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 419 KPSVSQKNDFHFYFITFLGV*TSSCIAFVWKSDVMYGDTKFLILSDGSGNR 571
           KP++ +KN  + ++ TFL   T+S   F     +  GD+ F  ++  SGNR
Sbjct: 310 KPNILKKNQTYLHWKTFLIYYTNSFFHFEILDRICGGDSLFRTIA-SSGNR 359


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 646 FENQYSTMLKRLMIYQKQLHLNGAATVSRAIT*N*KFSVPVHHITLPNK 500
           + +Q  T+L  +++ Q  +     ++ +++I     FSVPV H+ LP K
Sbjct: 425 YRSQLRTLLANVIVVQAIVERGSISSTTKSIINGILFSVPVEHL-LPKK 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,920
Number of Sequences: 27780
Number of extensions: 320300
Number of successful extensions: 709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)