Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0227
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17880.1 68414.m02212 nascent polypeptide-associated complex ...    79   3e-15
At1g73230.1 68414.m08475 nascent polypeptide-associated complex ...    76   2e-14
At5g47690.1 68418.m05887 expressed protein                             31   1.1  
At3g55330.1 68416.m06145 photosystem II reaction center PsbP fam...    28   7.9  

>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
           (NAC) domain-containing protein / BTF3b-like
           transcription factor, putative similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain; identical to cDNA
           BTF3b-like factor GI:5912423
          Length = 165

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 43/95 (45%), Positives = 63/95 (66%), Gaps = 11/95 (11%)
 Frame = +2

Query: 2   IEEVNMIKEDGTVIHFNNPKPQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRL 181
           IEEVN+ K+D  VI F NPK QAS+AANT+ ++G  + K+  ++LP I+SQLGPD ++ L
Sbjct: 54  IEEVNIFKDD-VVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNL 112

Query: 182 KRIA-----------SSVAAPKPLEEDDEVPNLVG 253
           K++A           ++ +A    E+DD+VP LVG
Sbjct: 113 KKLAEQFQKQASGEGNAASATIQEEDDDDVPELVG 147


>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain
          Length = 165

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 11/94 (11%)
 Frame = +2

Query: 2   IEEVNMIKEDGTVIHFNNPKPQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRL 181
           IEEVN+ K+D  VI F NPK QAS+AANT+ ++G  + K+  ++LP I+SQLGPD L+ L
Sbjct: 54  IEEVNIFKDD-VVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNL 112

Query: 182 KRIASSVAAPKP-----------LEEDDEVPNLV 250
           K++A       P            ++DD+VP+LV
Sbjct: 113 KKLAEQFQKQAPGAGDVPATIQEEDDDDDVPDLV 146


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 181 QSVQAVGSELAEDTREHLCGLLILPVSGNRERVR-GQRRLWLRVVK 47
           Q++  V  E +ED +EHL  +L+  +  NR  VR   RRL ++V++
Sbjct: 172 QNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIE 217


>At3g55330.1 68416.m06145 photosystem II reaction center PsbP family
           protein contains Pfam profile PF01789: PsbP
          Length = 230

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 42  YTLTTRSHKRRWPRTRSRL 98
           YTLTT +++RRW + + RL
Sbjct: 201 YTLTTGANERRWEKMKDRL 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,921
Number of Sequences: 28952
Number of extensions: 289806
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)