Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0226
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 153 4e-38
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 148 8e-37
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 141 1e-34
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 122 4e-29
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 113 4e-26
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 68 2e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 57 3e-09
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 42 8e-05
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 1.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.3
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 27 4.0
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 26 5.4
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.4
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.1
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 26 7.1
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 26 7.1
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 9.4
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 9.4
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.4
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 153 bits (370), Expect = 4e-38
Identities = 69/84 (82%), Positives = 77/84 (91%)
Frame = +3
Query: 255 INEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 434
INEPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGED
Sbjct: 171 INEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 230
Query: 435 FDNRMVNHFVQEFKRKYKKDLATN 506
FD+R+VNHF+QEFKRK KKD+ N
Sbjct: 231 FDSRLVNHFIQEFKRKNKKDITGN 254
Score = 140 bits (340), Expect = 2e-34
Identities = 65/85 (76%), Positives = 74/85 (87%)
Frame = +1
Query: 1 KHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 180
KHWPF+V+S GKP ++V YKGE KTF PEE+SSMVL KM+ETAEAYLG V +AV+TVP
Sbjct: 86 KHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVP 145
Query: 181 AYFNDSQRQATKDAGTISGLNVLRI 255
AYFNDSQRQATKDAG I+GLNVLRI
Sbjct: 146 AYFNDSQRQATKDAGLIAGLNVLRI 170
Score = 104 bits (249), Expect = 2e-23
Identities = 52/62 (83%), Positives = 55/62 (88%)
Frame = +2
Query: 509 RALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRLPWSQL 688
RA+RRLRTACERAKRTLSSS QASIEIDSLFEGIDFYTSITRARFEEL ADLFR +
Sbjct: 256 RAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPV 315
Query: 689 EK 694
E+
Sbjct: 316 ER 317
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 148 bits (359), Expect = 8e-37
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +3
Query: 255 INEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 434
INEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGED
Sbjct: 171 INEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 230
Query: 435 FDNRMVNHFVQEFKRKYKKDLATN 506
FD+R+VNHF QEFKRK KKD+ N
Sbjct: 231 FDSRLVNHFAQEFKRKNKKDITGN 254
Score = 135 bits (326), Expect = 8e-33
Identities = 62/85 (72%), Positives = 73/85 (85%)
Frame = +1
Query: 1 KHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 180
KHWPF+V+ GKP I+V +KGE KTF PEE+SSMVL KM+E+AEA+LG V +AV+TVP
Sbjct: 86 KHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVP 145
Query: 181 AYFNDSQRQATKDAGTISGLNVLRI 255
AYFNDSQRQATKDAG I+GLNVLRI
Sbjct: 146 AYFNDSQRQATKDAGLIAGLNVLRI 170
Score = 103 bits (248), Expect = 2e-23
Identities = 52/62 (83%), Positives = 55/62 (88%)
Frame = +2
Query: 509 RALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRLPWSQL 688
RA+RRLRTACERAKRTLSSS QASIEIDSL+EGIDFYTSITRARFEEL ADLFR +
Sbjct: 256 RAVRRLRTACERAKRTLSSSAQASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPV 315
Query: 689 EK 694
EK
Sbjct: 316 EK 317
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 141 bits (341), Expect = 1e-34
Identities = 87/178 (48%), Positives = 109/178 (61%), Gaps = 8/178 (4%)
Frame = +3
Query: 255 INEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 434
INEPTAAAIAYGLD K +NVLIFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGED
Sbjct: 175 INEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGED 234
Query: 435 FDNRMVNHFVQEFKRKYKKDLATNKELLGVCVLHVRGQRGPCHRPHKRALR*ILSLRVLT 614
FDN +V HF+QEFKRK K D++ + L R R C R KRAL + V
Sbjct: 235 FDNALVEHFIQEFKRKQKIDISDDPRAL-------RRLRSACERA-KRALSSVTQTTVEV 286
Query: 615 STRQLLVLASRS*TPI-CSGYHGASWRS-------LLRDAKIG*GXKFHDIVLVGGST 764
+ + S S T + ++++ +L+D+K+ HDIVLVGGST
Sbjct: 287 DSLSNGIDFSSSITRARFEDINATTFKATIDPVAKVLKDSKVP-KADVHDIVLVGGST 343
Score = 121 bits (291), Expect = 1e-28
Identities = 57/85 (67%), Positives = 68/85 (80%)
Frame = +1
Query: 1 KHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 180
KHWPF+V+ + G P I+V Y GE K F +E+S+MVLTKMKE +EA L K V+ AVITVP
Sbjct: 90 KHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVP 149
Query: 181 AYFNDSQRQATKDAGTISGLNVLRI 255
AYF+DSQR ATKDAG I+GLNVLRI
Sbjct: 150 AYFSDSQRAATKDAGAIAGLNVLRI 174
Score = 81.8 bits (193), Expect = 1e-16
Identities = 38/54 (70%), Positives = 46/54 (85%)
Frame = +2
Query: 509 RALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFR 670
RALRRLR+ACERAKR LSS TQ ++E+DSL GIDF +SITRARFE++NA F+
Sbjct: 260 RALRRLRSACERAKRALSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFK 313
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 122 bits (295), Expect = 4e-29
Identities = 55/85 (64%), Positives = 72/85 (84%)
Frame = +1
Query: 1 KHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 180
K +PF +V+D +P ++V G+ K F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVP
Sbjct: 119 KSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVP 178
Query: 181 AYFNDSQRQATKDAGTISGLNVLRI 255
AYFND+QRQATKDAGTI+GLNV+RI
Sbjct: 179 AYFNDAQRQATKDAGTIAGLNVIRI 203
Score = 120 bits (289), Expect = 2e-28
Identities = 51/89 (57%), Positives = 74/89 (83%)
Frame = +3
Query: 255 INEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 434
+NEPTAAAIAYGLDK T E++++++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGED
Sbjct: 204 VNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGED 262
Query: 435 FDNRMVNHFVQEFKRKYKKDLATNKELLG 521
FDNR++N+ + + RK D+ + + +G
Sbjct: 263 FDNRVINYLARTYNRKNNVDVTKDLKAMG 291
Score = 60.9 bits (141), Expect = 2e-10
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +2
Query: 509 RALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRLPWSQL 688
+A+ +L+ E+AKRTLSS IEI+S F G DF +++RA+FEE+N DLF+ +
Sbjct: 288 KAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKPV 347
Query: 689 EK 694
E+
Sbjct: 348 EQ 349
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 113 bits (271), Expect = 4e-26
Identities = 55/102 (53%), Positives = 72/102 (70%)
Frame = +3
Query: 255 INEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 434
+NEPTAAA+AYGLDKK + V +FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGED
Sbjct: 217 VNEPTAAALAYGLDKKN--DAIVAVFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGED 274
Query: 435 FDNRMVNHFVQEFKRKYKKDLATNKELLGVCVLHVRGQRGPC 560
FD +V H V+ FK+ DL +K+ L V + ++ C
Sbjct: 275 FDVALVRHIVETFKKNEGLDL--SKDRLAVQRIREAAEKAKC 314
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = +1
Query: 73 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 252
KT+ P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR
Sbjct: 156 KTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLR 215
Query: 253 I 255
+
Sbjct: 216 V 216
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 512 ALRRLRTACERAKRTLSSSTQASIEIDSLFEGI----DFYTSITRARFEELNADLFR 670
A++R+R A E+AK LSS ++ I + + I+RA+FE+L L R
Sbjct: 301 AVQRIREAAEKAKCELSSLSKTDISLPFITADATGPKHINMEISRAQFEKLVDPLVR 357
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 67.7 bits (158), Expect = 2e-12
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +3
Query: 255 INEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 422
+N+ AAA+ YG+ K E R V I D G + VSI+ G F +KST D +L
Sbjct: 175 MNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNL 234
Query: 423 GGEDFDNRMVNHFVQEFKRKYKKDLATN 506
G + D ++++F EFK KYK D+ +N
Sbjct: 235 GSRNMDKALIDYFAAEFKEKYKIDVLSN 262
Score = 56.4 bits (130), Expect = 4e-09
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = +1
Query: 49 KVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGT 228
KV Y E+ F ++ + TK+K AEA L +V + VI++PA+F D QR+A +A
Sbjct: 106 KVQYLNEETAFSNIQLIAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAAN 165
Query: 229 ISGLNVLRI 255
I+GLN LR+
Sbjct: 166 IAGLNPLRL 174
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 509 RALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRLPWSQL 688
+A RL TA ER K+ LS++ A + ++ + ID + I R+ FEEL L +
Sbjct: 264 KATFRLATAVERLKKVLSANANAPLNVEMIMNDIDASSFIKRSDFEELIKPLLERLTPPI 323
Query: 689 EKS 697
EK+
Sbjct: 324 EKA 326
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 57.2 bits (132), Expect = 3e-09
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +2
Query: 494 PRYQQRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFE 646
PR R+L +LR CE KR LS+ T AS +DSL +GIDF++SI R R++
Sbjct: 277 PRKNARSLAKLRAQCEITKRVLSNGTTASAAVDSLADGIDFHSSINRLRYD 327
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +1
Query: 67 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 246
++K E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL V
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPV 193
Query: 247 LRI 255
L++
Sbjct: 194 LQL 196
Score = 49.2 bits (112), Expect = 7e-07
Identities = 23/88 (26%), Positives = 49/88 (55%)
Frame = +3
Query: 255 INEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 434
I++P A +A ++ ++ V++ + G +VS+++++ G+ + ++ D +LGGE
Sbjct: 197 IHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQ 256
Query: 435 FDNRMVNHFVQEFKRKYKKDLATNKELL 518
+ +VN F +EF++K D N L
Sbjct: 257 LTDVLVNFFAKEFEKKNGIDPRKNARSL 284
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 42.3 bits (95), Expect = 8e-05
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +2
Query: 500 YQQRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADL 664
+ RAL RL R K LS++++A I+ L +GIDF ITR+ E L D+
Sbjct: 289 HNHRALARLEKEALRVKHILSANSEAIASIEELADGIDFRLKITRSVLESLCKDM 343
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 67 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 246
+++ + EE+ +M + AE + + + V+TVP +FN+ QR +A I +V
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHV 190
Query: 247 LRI 255
L +
Sbjct: 191 LAL 193
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 439 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 329
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -3
Query: 439 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLS 293
+ S PP P + IP PPPRS ST R P P S
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 746 YNIVEFXPLSNLGITEKTSPTGS 678
YN +F LS++GITEKT S
Sbjct: 489 YNEEDFSYLSDIGITEKTQEVSS 511
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 465 QEFKRKYKKDLATNKELLGVCVLHVRGQR-GPCHRPHKRALR*ILSLR 605
+E KK++ E + + + V G GP H+PH R LR + LR
Sbjct: 4 KEIDINQKKNVLPKPEDIQLIICDVDGTLLGPDHKPHPRNLRALKYLR 51
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +3
Query: 291 LDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 461
LDK G+ I GG T SIL +GI VK E F+N F
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKF 104
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 475 LNSWTKWLTMRLSKSSPPKWVSPAVDF 395
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 400 PPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPTKSS*AFAY 531
PPPATP+ R T A + + SS S P+ SS + AY
Sbjct: 274 PPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDAY 317
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 356 VEGTAAEVKDKYISFSSTLFVKTVSNRSSSRFIDIRRTFKP 234
++ E+ +KY TLF+K +R +I + R F+P
Sbjct: 174 IKSIEEELVEKYQQSWKTLFLKKPRSRFDGCYISVCRYFRP 214
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 7.1
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = -3
Query: 508 LLVARSFLYFLLNSWTKWLTMRLSKSSPP-KWVSP--AVDFTSKIPSSMVRMDTSKVPPP 338
+ +A LY LLN K S SSPP SP FT S+ M +S P
Sbjct: 681 ITIALDSLYVLLNMRAKSTPNSTSFSSPPTPHRSPFSGQAFTGMGLSNYSLMSSSSFPSA 740
Query: 337 RSK-ISTFRSPVPFLSRP*AIAAAVGSLIFG 248
+S S F S P ++ ++++ SL FG
Sbjct: 741 QSSPTSPFLSGTPSIANQ---SSSIASLQFG 768
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 414 THLGGEDFDNRMVNHFVQEFKRKYKKDLATNKELLGV 524
THL V+ F+ F R + + L++NK++L V
Sbjct: 1482 THLYKYYLRRNFVSSFIDAFSRAFSELLSSNKDVLEV 1518
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 94 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 216
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 343 AVPSTCPSLPSRMVSSR*NPPPATPTW 423
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,483,738
Number of Sequences: 5004
Number of extensions: 74932
Number of successful extensions: 303
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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