Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0225
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    44   3e-05
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    33   0.048
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   5.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   9.5  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   9.5  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +1

Query: 79  NREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNADEAPANPTSAAS 249
           +RED L++FC+    D  + +FFLES+NW  ++A +  +E     ++    P+S  S
Sbjct: 2   DREDILKEFCNRNNIDVSQGRFFLESTNWNYELATALLHEVIPPEEDHGLQPSSDVS 58


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +1

Query: 70  MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNAD 216
           M  +    +  FC +T +  ++++ +L  ++  L  A++ F+E+GG  D
Sbjct: 1   MDGDEASLVANFCAITNSTPEKAQEYLSVADGDLSTAITLFFESGGVTD 49


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 626  QTLARDHLQFVLIYSQL 576
            QTLARDH+ F L+ +Q+
Sbjct: 2271 QTLARDHVAFTLMLAQV 2287


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 164 QFEDSKKNLLRSSSAPVTSQN*RNVSSLFADMVISNIYFVLIYK 33
           +F    +NL  +++AP T +  R  SS  A    S +Y    YK
Sbjct: 356 EFAGFSRNLTNTAAAPTTYEYKRPTSSYTAKDATSKVYRSNTYK 399


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 224 QLIQRVRHHSRSARQRYGITARLTSGTKVPEKRKKENLKYKVWDHRIAAAGKLK 385
           ++IQ+ R       ++Y  T    S   +PEK+ KE++        I A  K+K
Sbjct: 10  EIIQQRRKRRLEILKKYQQTGNGHSDLSIPEKKLKEDVDQVSTTKPIEAVPKMK 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,160
Number of Sequences: 5004
Number of extensions: 47269
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)