Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0225
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 47 2e-05
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 36 0.021
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503... 33 0.15
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694... 32 0.46
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 30 1.4
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 5.6
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 28 5.6
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 27 9.9
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 73 SANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENG-GNADEAPAN 231
+A + + FC VT A + FFLES NW L+ A+ SFY++ G+A A A+
Sbjct: 12 AAEAQSLVESFCGVTSATPQEAAFFLESHNWALESAVRSFYDSADGDASAAAAD 65
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 70 MSANREDTLRQFCDVTG-ADEDRSKFFLESSNWQLDVALSSFYENGGNADEAPANP 234
M+ +D + F VTG +D D L + NW L +A+SS N + D AP+ P
Sbjct: 1 MAETVDDKVSYFQAVTGISDHDLCTEILAAHNWDLQLAVSSITANPSSPDPAPSAP 56
>04_04_1541 +
34249778-34249882,34249964-34250115,34250225-34250350,
34251868-34252030,34252601-34252678,34252749-34252847,
34253045-34253188,34253344-34253446,34255303-34255646,
34255727-34255891
Length = 492
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 76 ANREDTLRQFCDVT-GADEDRSKFFLESSNWQLDVALSSFYENGGNADEAPANPTSAASF 252
A +E + F ++ G + + FL+ ++W L+ AL FY +G A A P+ AA+
Sbjct: 9 AEKESLVTSFLEIAAGQTPETATQFLQMTSWHLEEALQLFYIDGEAALAAHPAPSPAAAA 68
Query: 253 SFCQTAI 273
A+
Sbjct: 69 EAAAAAV 75
>06_01_0903 -
6939672-6939782,6940051-6940110,6940221-6940322,
6940464-6940513,6940686-6940750,6940849-6940931,
6941117-6941140,6941798-6941856,6942041-6942174,
6942823-6942884,6942908-6942976
Length = 272
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 88 DTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFY 195
D ++QF +TGA E + L++S+W L+ A FY
Sbjct: 32 DKVQQFMTITGASEKVALQALKASDWHLEGAFDFFY 67
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 41 LIQNIYSKLPCLRIEKIHYVSFVMLP 118
LI NI KLPCLR+ + Y LP
Sbjct: 404 LIDNILPKLPCLRVLDLSYTQLESLP 429
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 299 GTKVPEKRKKEN--LKYKVWDHRIAAAGKLKR*GRR 400
GTK P R+K L + W+H ++ GKL+ GR+
Sbjct: 81 GTKSPWSRRKRKRPLSCRHWNHLFSSDGKLRDGGRK 116
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 85 EDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGG-NADEAPANP 234
+D + F +TGADE + LE + L+ A+++++ G + A NP
Sbjct: 6 QDAIDTFVGITGADEAVAARKLEEHHGDLNEAVNAYFNEGDRTSTRANENP 56
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 58 FEITMSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNAD 216
++++++ D +RQ D + A+ + S S W L AL F N GN +
Sbjct: 256 YKVSVTPGISDEIRQIIDDSSAEVNSSS----SDFWVLVAALKEFIANEGNGE 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,513
Number of Sequences: 37544
Number of extensions: 318279
Number of successful extensions: 859
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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