Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0225
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.28 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 218 RLQLIQRVRHHSRSARQRYGITARLTSGTKVPEKRKKENLKYKVWDHR 361
           R+   +  RHH R  R R     R T        +++E+ +   W+H+
Sbjct: 146 RINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHK 193


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 179 LFQVSMRTVVMQMRLQLIQRVRHHSRSARQRYGITARLTSGT 304
           +FQ  + ++++ M   +   + H + SAR   GIT  LT  T
Sbjct: 245 VFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTT 286


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 VRHHSRSARQRYGITARLTSGTKVPEKRKKENL 337
           V  H R  R   G       G KVPEK+K++ +
Sbjct: 188 VEAHLRKGRGAIGAYGP-EKGPKVPEKKKEDEI 219


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 584  SQLRRRGPLDHGLYWMLVRLQRRLLPL 504
            ++++RR  L++G  W+    ++R L L
Sbjct: 989  AEIKRRPDLEYGKVWLFFGCRQRNLDL 1015


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 139 KFFLESSNWQLDV 177
           K+F E  NW LD+
Sbjct: 538 KYFYEIDNWMLDL 550


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 139 KFFLESSNWQLDV 177
           K+F E  NW LD+
Sbjct: 538 KYFYEIDNWMLDL 550


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 214  LHYHRSHRNLKEQHLI--ASLRILKRIYC 134
            LHY  +H NL E  L   A+   LK + C
Sbjct: 1439 LHYRTAHGNLDELQLSRHATSHELKGLLC 1467


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 214  LHYHRSHRNLKEQHLI--ASLRILKRIYC 134
            LHY  +H NL E  L   A+   LK + C
Sbjct: 1435 LHYRTAHGNLDELQLSRHATSHELKGLLC 1463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,948
Number of Sequences: 438
Number of extensions: 3210
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)