Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0224
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.95 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.9  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   6.7  

>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -1

Query: 101 LYKTLVFIFHLLTGYAAR*SLLIKVYP 21
           ++ T+VFI   LTG+AA+ S+++K+ P
Sbjct: 48  VFNTVVFIIVFLTGWAAK-SIIVKLLP 73


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 476  MYFFCNLNI*IRPTKLLICYSFKY*KQLIIPYFTTSNYEKVY 351
            M+FF NL   I     +ICYS      LI+P F    Y +VY
Sbjct: 1021 MFFFRNL-FQIVFVLAVICYSSPMFMILIVPLFFLYRYNQVY 1061


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 378 KIRYNQLF-LIFETVTNKQFCRXYSNIKITEEVHYRNT 488
           KIR  Q   +I  +V  K  C  +  ++ T ++HY+NT
Sbjct: 319 KIRKGQAVQIILHSVNLKNVCDLF--LRYTRDIHYKNT 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,876
Number of Sequences: 5004
Number of extensions: 43548
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)