Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0224
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0917 - 22574472-22574558,22574756-22574821,22574848-225748...    30   1.7  
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439...    28   6.9  

>07_03_0917 -
           22574472-22574558,22574756-22574821,22574848-22574886,
           22574978-22575026,22575492-22575559,22575650-22575695,
           22575773-22575866,22575956-22576018,22576436-22576558,
           22577143-22577176,22577489-22577551,22577678-22577785,
           22577914-22577976,22578322-22578378
          Length = 319

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 164 VLWYRPIHDLTSIIVSSKFPTLYKTLVFIFHLL 66
           VLWYRP+++      + KF   +  LV++FH+L
Sbjct: 191 VLWYRPLYNAMRTDSALKFGLFF--LVYLFHIL 221


>04_04_1158 -
           31342934-31343272,31343508-31343658,31343745-31343976,
           31344173-31344284,31344572-31344690,31344772-31344936,
           31345049-31345247,31345351-31345733,31345838-31345902,
           31346003-31346047,31346402-31346467,31346707-31346778,
           31346907-31346981,31347086-31347157,31347255-31347326,
           31347954-31348022,31348109-31348180,31348280-31348351,
           31348756-31348827,31349295-31349366,31349528-31349711,
           31350082-31350220
          Length = 948

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 310 CKFHXNYAKPNDPRKISLKLLSLSMNDLCFVKPNAM 203
           CK   N A  +  +  SLKLL LS N++    P AM
Sbjct: 280 CKISDNLASIDFSKFASLKLLDLSFNNITGQVPEAM 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,717,797
Number of Sequences: 37544
Number of extensions: 210395
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)