Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0224
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    33   0.16 
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    28   6.2  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    28   6.2  

>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 488 CISVMYFFCNLNI*IRPTKLLICYSFKY*KQLIIPYFTTS 369
           C+ ++YF CNL        + +C++F Y  Q +IP+F TS
Sbjct: 58  CLLIVYFICNLLF-----SMALCFAFFY--QFLIPFFVTS 90


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 158  TIHNVSIELANKHYVHCIRFYE 223
            TIH + +E+A+++YV CI   E
Sbjct: 2240 TIHTIDMEMASQNYVTCIGLLE 2261


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 158  TIHNVSIELANKHYVHCIRFYE 223
            TIH + +E+A+++YV CI   E
Sbjct: 2238 TIHTIDMEMASQNYVTCIGLLE 2259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,288,477
Number of Sequences: 27780
Number of extensions: 227858
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)