Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0224
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.60 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.60 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.60 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.79 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.79 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.79 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.5  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 472 TSSVILIFEYXLQNCL-FVTVSNIRNN*LYLILRHRTMRRYI 350
           + +V LI  Y   NC+ F+  S++    L LI  HRT  RY+
Sbjct: 251 SDAVPLIGSYF--NCIMFMVASSVVLTVLVLIFHHRTPDRYV 290


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 472 TSSVILIFEYXLQNCL-FVTVSNIRNN*LYLILRHRTMRRYI 350
           + +V LI  Y   NC+ F+  S++    L LI  HRT  RY+
Sbjct: 251 SDAVPLIGSYF--NCIMFMVASSVVLTVLVLIFHHRTPDRYV 290


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 472 TSSVILIFEYXLQNCL-FVTVSNIRNN*LYLILRHRTMRRYI 350
           + +V LI  Y   NC+ F+  S++    L LI  HRT  RY+
Sbjct: 251 SDAVPLIGSYF--NCIMFMVASSVVLTVLVLIFHHRTPDRYV 290


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 433 NCL-FVTVSNIRNN*LYLILRHRTMRRYI 350
           NC+ F+  S++    L LI  HRT  RY+
Sbjct: 262 NCIMFMVASSVVLTVLVLIFHHRTPDRYV 290


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 433 NCL-FVTVSNIRNN*LYLILRHRTMRRYI 350
           NC+ F+  S++    L LI  HRT  RY+
Sbjct: 262 NCIMFMVASSVVLTVLVLIFHHRTPDRYV 290


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 433 NCL-FVTVSNIRNN*LYLILRHRTMRRYI 350
           NC+ F+  S++    L LI  HRT  RY+
Sbjct: 262 NCIMFMVASSVVLTVLVLIFHHRTPDRYV 290


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 472 TSSVILIFEYXLQNCL-FVTVSNIRNN*LYLILRHRTMRRYI 350
           + +V LI  Y   NC+ F+  S++    L L   HRT  RY+
Sbjct: 319 SDAVPLIGSYF--NCIMFMVASSVVLTVLVLNFHHRTPDRYV 358


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 195 CLLANSIDTLCIVVPTDS 142
           C+L NS+  L   VP++S
Sbjct: 224 CILINSVALLVFYVPSES 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,480
Number of Sequences: 438
Number of extensions: 2771
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)