Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0223
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 102 6e-23
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 50 2e-07
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 50 2e-07
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 36 0.008
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 33 0.053
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.21
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 30 0.28
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.37
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 28 1.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.6
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 8.0
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 8.0
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 102 bits (244), Expect = 6e-23
Identities = 51/92 (55%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Frame = +2
Query: 260 APIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 436
APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN ANV+RYFPTQ
Sbjct: 46 APIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQ 105
Query: 437 ALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNL 532
ALNFAFKDK+K++F G ++ + ++FAGNL
Sbjct: 106 ALNFAFKDKFKKMF-GYKKERDGYAKWFAGNL 136
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 305 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 484
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225
Query: 485 G 487
G
Sbjct: 226 G 226
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 571 FVYPLDFARTRLAAD 615
FVY LD+ARTRLA D
Sbjct: 149 FVYSLDYARTRLAND 163
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 204 FAKDFLAGGISAXVSKT 254
F DF+ GG+SA VSKT
Sbjct: 27 FFFDFMMGGVSAAVSKT 43
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = +2
Query: 257 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 436
V+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N +R FP
Sbjct: 38 VSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYG 90
Query: 437 ALNFAFKDKYKQ 472
A+ FA + KQ
Sbjct: 91 AVQFATFNMLKQ 102
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 332 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 448
YK I A I K +G+ F+RG +N+++ P ++ +
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 565 CAFVYPLDFARTRLAAD 615
CA YPLD ARTRL+ +
Sbjct: 130 CATTYPLDIARTRLSIE 146
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 50.4 bits (115), Expect = 2e-07
Identities = 28/92 (30%), Positives = 49/92 (53%)
Frame = +2
Query: 257 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 436
VAP++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R FP
Sbjct: 35 VAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYRVFPYA 93
Query: 437 ALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNL 532
+ F ++ ++V + + +T R+ +G+L
Sbjct: 94 GIKFVAYEQVRRVLIRDPEHETHARRFLSGSL 125
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 35.5 bits (78), Expect = 0.008
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +2
Query: 257 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 436
V P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P+
Sbjct: 353 VFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSV 409
Query: 437 ALNFAFKDKYKQ 472
A+++ + K+
Sbjct: 410 AISYLVYENCKK 421
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 257 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANVIRYFPT 433
+ P++ +K +Q +S+ Q K I+ + + + K G+ ++RG ++ FP
Sbjct: 246 IYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGILGMFPY 301
Query: 434 QALNFAFKDKYKQVFLG 484
A + + K+ ++G
Sbjct: 302 SATDLGTFEGLKRTWIG 318
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 32.7 bits (71), Expect = 0.053
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 257 VAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYF 427
VA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 17 VAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEA 76
Query: 428 PTQALNFAFKDKYKQVF 478
P +AL FA D Y +++
Sbjct: 77 PKRALKFASNDTYSKLW 93
Score = 31.5 bits (68), Expect = 0.12
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 257 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 433
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 434 QALNFAFKDKYK 469
A F K +
Sbjct: 175 NAGYFGVIQKIR 186
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 263 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 442
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 443 NFAFKDKYKQV 475
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +2
Query: 317 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 496
A Y DAF +I K +GL +F+RG F ++ + F + +K K
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHV-GIQFPLYEYFKSFLDDFFGK 283
Query: 497 KTQFWRYFAGNL 532
K+ F A L
Sbjct: 284 KSNFHIVLAATL 295
Score = 29.1 bits (62), Expect = 0.65
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 257 VAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANVIRYF 427
VAP++ VK Q Q + G + + I +G+ +RG ++ Y
Sbjct: 23 VAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYL 82
Query: 428 PTQALNFAFKDKYKQVFLGGVDKK 499
P+ ++ F +K K +F GV+KK
Sbjct: 83 PSWSIYFVVYEKCKVLF--GVNKK 104
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 305 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 448
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Frame = +2
Query: 242 RLQDPVAPIERVKLLLQVQHVSK-QIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 418
++ D P + +QV K + A K + D + G + FW G F +
Sbjct: 180 KVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLS 239
Query: 419 RYFP---TQALNFAFKDKYKQVFLGGVDKKT 502
+ F AL VF G+D+KT
Sbjct: 240 QSFKLHLADALCLGVSANGDMVFSSGIDRKT 270
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 53 YEITPNLLFKNQELVFRDPPSACAATPTSTY 145
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 341 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 433
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 357 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGAT 256
T+ + + + WSA I +LT C SLT S+ T
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLT 566
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,514
Number of Sequences: 5004
Number of extensions: 52069
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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