Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0223
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   188   6e-50
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   188   6e-50

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  188 bits (457), Expect = 6e-50
 Identities = 91/142 (64%), Positives = 104/142 (73%)
 Frame = +2

Query: 257 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 436
           VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQ
Sbjct: 28  VAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQ 87

Query: 437 ALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNLCLRWCRRSHLSVLXXXXXXXXXXXXXXX 616
           ALNFAFKDKYKQVFLGGVDK TQF RYF GNL       +  S+                
Sbjct: 88  ALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA-TSLCFVYPLDFARTRLAAD 146

Query: 617 XXXGDXQREFSGLGNCISKIFQ 682
                 +REF+GLGNC++KIF+
Sbjct: 147 VGKAGGEREFTGLGNCLTKIFK 168



 Score = 48.0 bits (109), Expect = 9e-08
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = +3

Query: 177 MSNLADPVAFAKDFLAGGISAXVSKT 254
           MS LADPVAFAKDFLAGG++A +SKT
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKT 26



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 263 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 421
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 323 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 460
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  188 bits (457), Expect = 6e-50
 Identities = 91/142 (64%), Positives = 104/142 (73%)
 Frame = +2

Query: 257 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 436
           VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQ
Sbjct: 28  VAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQ 87

Query: 437 ALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNLCLRWCRRSHLSVLXXXXXXXXXXXXXXX 616
           ALNFAFKDKYKQVFLGGVDK TQF RYF GNL       +  S+                
Sbjct: 88  ALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA-TSLCFVYPLDFARTRLAAD 146

Query: 617 XXXGDXQREFSGLGNCISKIFQ 682
                 +REF+GLGNC++KIF+
Sbjct: 147 VGKAGGEREFTGLGNCLTKIFK 168



 Score = 48.0 bits (109), Expect = 9e-08
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = +3

Query: 177 MSNLADPVAFAKDFLAGGISAXVSKT 254
           MS LADPVAFAKDFLAGG++A +SKT
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKT 26



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 263 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 421
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 323 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 460
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,829
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)