Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0220
         (336 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5YMC9 Cluster: Putative uncharacterized protein; n=1; ...    35   0.41 
UniRef50_Q6YYT8 Cluster: Putative uncharacterized protein P0584E...    33   1.7  
UniRef50_Q6Z9T2 Cluster: Putative uncharacterized protein P0455A...    32   2.2  
UniRef50_Q38A05 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_Q55Y32 Cluster: Putative uncharacterized protein; n=2; ...    31   5.1  
UniRef50_Q9HNH0 Cluster: Threonine synthase; n=3; Halobacteriace...    31   6.7  
UniRef50_P52952 Cluster: Homeobox protein Nkx-2.5; n=32; Euteleo...    31   6.7  

>UniRef50_Q5YMC9 Cluster: Putative uncharacterized protein; n=1;
           Nocardia farcinica|Rep: Putative uncharacterized protein
           - Nocardia farcinica
          Length = 147

 Score = 34.7 bits (76), Expect = 0.41
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 98  LPT-SLYSALLXRXPQPRSCGAQCARDHPRRCALGLCAPD*SSAKMGTARVRAVVGRFLE 274
           LP+ S Y A L R  +  SC     R  PR    G C+P  +SA  G+AR +    R   
Sbjct: 37  LPSVSFYDAALPRVQRGASCEDSSVRGRPRVRGSGQCSPSIASAVSGSARSQRTQARRYS 96

Query: 275 RGXXXAQWK 301
                  W+
Sbjct: 97  VNPRPRAWR 105


>UniRef50_Q6YYT8 Cluster: Putative uncharacterized protein
           P0584E12.24; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0584E12.24 - Oryza sativa subsp. japonica (Rice)
          Length = 261

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 101 PTSLYSALLXRXPQPRSCGAQCARDHPRRCA 193
           PTS Y+ LL   P P++C A    DHP   A
Sbjct: 85  PTSHYTQLLPPPPPPKACPAVATADHPLHAA 115


>UniRef50_Q6Z9T2 Cluster: Putative uncharacterized protein
           P0455A11.38; n=3; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0455A11.38 - Oryza sativa subsp. japonica (Rice)
          Length = 186

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
 Frame = +2

Query: 101 PTSLYSALLXRXPQP-RSCGAQCARDHPRRCALGLCAPD*SSAKMGTARVRAVVGRFLER 277
           P +     L R P P R+C   CA  H       LCAP  S A +   R R    R L+ 
Sbjct: 42  PATTEMVALPRAPSPTRACTRGCAHGHRVAARRCLCAPPPSVAGVNDGRRRDERERGLDT 101

Query: 278 GXXXAQWKFRDAT 316
                 W+ +  T
Sbjct: 102 NRLRCSWRKKRRT 114


>UniRef50_Q38A05 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 1181

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -1

Query: 318 TVASRNFHCAXKXPRSKKRPTTARTRAVPIFAEDQSGAHRPRAQR 184
           T A R      + PR K+ P TAR+R VP  A  Q+GA   R  R
Sbjct: 70  TTAPRGETHPPRVPR-KQTPPTARSRPVPPLALTQTGARTERGHR 113


>UniRef50_Q55Y32 Cluster: Putative uncharacterized protein; n=2;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 1451

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 4   GLECGRTASTCWRLSASWSRGQXAG 78
           G+  GR AS CW   A W+ G  AG
Sbjct: 338 GVAAGRMASACWTADAVWTWGTNAG 362


>UniRef50_Q9HNH0 Cluster: Threonine synthase; n=3;
           Halobacteriaceae|Rep: Threonine synthase - Halobacterium
           salinarium (Halobacterium halobium)
          Length = 363

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 189 VPSACVPQTDLQQKWVPLVYGPSWDASWSVVXXXHSGSFATRPSRI 326
           +P A      L + W PLV    WDA + +     SGS+  R + +
Sbjct: 56  LPVAADDAVSLGEGWTPLVSASEWDAEFKLDYVCPSGSYKDRGAAV 101


>UniRef50_P52952 Cluster: Homeobox protein Nkx-2.5; n=32;
           Euteleostomi|Rep: Homeobox protein Nkx-2.5 - Homo
           sapiens (Human)
          Length = 324

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 285 KXPRSKKRPTTARTRAVPIFAEDQSGAHRPRAQRR 181
           K PR++K+   A  +AV +   +   A RPRA+RR
Sbjct: 104 KDPRAEKKELCALQKAVELEKTEADNAERPRARRR 138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,252,920
Number of Sequences: 1657284
Number of extensions: 4208151
Number of successful extensions: 12561
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12559
length of database: 575,637,011
effective HSP length: 87
effective length of database: 431,453,303
effective search space used: 10354879272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)