Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0220
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   1.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   3.1  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    24   5.4  
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   9.4  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 219  LQQKWVPLVYGPSWDASWS 275
            LQ  W+  VYG SW   WS
Sbjct: 2194 LQNYWMSSVYGRSWAFMWS 2212


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 213  TDLQQKWVPLVYGPSWDASW 272
            T LQ  W+  +YG SW   W
Sbjct: 2153 TILQNYWLSTLYGRSWKYLW 2172


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 22  TASTCWRLSASWSRG 66
           TASTC  L+ SWS G
Sbjct: 141 TASTCKGLNGSWSGG 155


>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 198

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 91  PPADTQXTVHATTTPRVASMSTRFYRTRV 5
           P ADT   +H+   P + ++ TR+ ++ +
Sbjct: 142 PKADTSLIIHSLDDPSLYAVVTRYSKSGI 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,075,844
Number of Sequences: 5004
Number of extensions: 14518
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)