Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0220
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808...    27   2.9  
05_06_0216 - 26453029-26454597                                         26   6.6  
04_04_1563 - 34445832-34445891,34445981-34446097,34447363-344474...    26   6.6  
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743...    26   8.7  

>09_04_0483 +
           17979566-17980019,17980242-17980321,17980431-17980895,
           17981460-17981597,17982574-17982660,17982781-17982909,
           17983034-17983225,17983393-17983479,17983707-17984378
          Length = 767

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 48  GVVVAWTVCWVSAGGAHSQPLSIPXCC 128
           GVV+AW   WVSA G  S    +P  C
Sbjct: 97  GVVLAWEDLWVSAAGGKSG--RVPILC 121


>05_06_0216 - 26453029-26454597
          Length = 522

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +3

Query: 189 VPSACVPQTDLQQKWVPLVYGP---SWDASWSVVXXXHSGSFATRPSRIA 329
           VPS+C P   L +    L+      SWDASW  +    + S  T    IA
Sbjct: 362 VPSSCSPSPPLLRSLRRLLVADVPSSWDASWPRILLDAAPSLKTLHIHIA 411


>04_04_1563 -
           34445832-34445891,34445981-34446097,34447363-34447450,
           34447626-34447675,34447848-34448285
          Length = 250

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 312 ASRNFHCAXKXPRSKKRPTTARTRAVPI 229
           A+  F C+   PR ++ PTTAR     +
Sbjct: 5   AATAFSCSFASPRHRRSPTTARASGAAV 32


>06_03_0859 -
           25473784-25473798,25473862-25473923,25474251-25474345,
           25475718-25475831,25476490-25476695,25476834-25476959,
           25479516-25480178
          Length = 426

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 167 RTERRKIEAEAXGTAXRNRERLGVRAA 87
           ++ RR+ EA A   A R R RLGV  A
Sbjct: 114 KSSRRREEAAAAPEAARGRARLGVSVA 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,096,348
Number of Sequences: 37544
Number of extensions: 129682
Number of successful extensions: 387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)