Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0220
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    27   3.8  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_25729| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 98  LPTSLYSALLXRXPQPRSCGAQCARDHPRR 187
           LP S  S+     PQP S     +RDHP R
Sbjct: 296 LPLSNQSSSTSTTPQPSSPATPSSRDHPTR 325


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 116  SALLXRXPQPRSCGAQCARDHPRRCALGLC 205
            S ++   P+P SC + C++D    C L  C
Sbjct: 2131 SIIVNSEPKPESCPSYCSKDCRPPCPLKCC 2160


>SB_25729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 9   RVR*NRVDMLATLGVVVAWTVCW 77
           R R NR   L + G+V+A+ VCW
Sbjct: 218 RERINRSVTLLSFGIVLAFGVCW 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,952,396
Number of Sequences: 59808
Number of extensions: 139387
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)