Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0220
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    28   1.9  
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    26   5.8  

>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 45  LGVVVAWTVCWVSAGGAHSQPLSIP 119
           L  V  W + W SA  A +QP S+P
Sbjct: 673 LAYVAPWQISWGSAFHAFAQPFSVP 697


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 45  LGVVVAWTVCWV 80
           LG+++AW VCW+
Sbjct: 224 LGIMIAWFVCWI 235


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 285 KXPRSKKRPTTARTRAVPIFAEDQSGAHRPRAQRR 181
           K PR + +  T    A    +ED   A RPR  RR
Sbjct: 794 KLPRHRIQALTEEAAAAAASSEDSKQAKRPRKSRR 828


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 285 KXPRSKKRPTTARTRAVPIFAEDQSGAHRPRAQRR 181
           K PR + +  T    A    +ED   A RPR  RR
Sbjct: 794 KLPRHRIQALTEEAAAAAASSEDSKQAKRPRKSRR 828


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,179,689
Number of Sequences: 27780
Number of extensions: 89097
Number of successful extensions: 248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)