Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0220
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   4.0  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   4.0  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   4.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   7.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 94   APPADTQXTVHATTT 50
            APP   Q T+ ATTT
Sbjct: 1365 APPHSPQITLTATTT 1379


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 328 AIRDGRVAKLPLCXXXTTLQEASH 257
           A+R GRV K         +Q++SH
Sbjct: 137 AVRFGRVPKREKARILAAMQQSSH 160


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 223 SKNGYRSCTGRRGTLLGAW 279
           S +GY++   ++  LLG W
Sbjct: 160 SMDGYQNILDKKDELLGEW 178


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 223 SKNGYRSCTGRRGTLLGAW 279
           S +GY++   ++  LLG W
Sbjct: 160 SMDGYQNILDKKDELLGEW 178


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 223 SKNGYRSCTGRRGTLLGAW 279
           S +GY++   ++  LLG W
Sbjct: 160 SMDGYQNILDKKDELLGEW 178


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 281 DHAPRSVPRRPVHE 240
           DHAP+   R  VH+
Sbjct: 282 DHAPKQTVRFKVHD 295


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 45  LGVVVAWTVCW 77
           + VVVA+ +CW
Sbjct: 288 VAVVVAFFICW 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,491
Number of Sequences: 438
Number of extensions: 1170
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)