Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0218
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    28   1.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   2.7  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    26   4.8  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    26   4.8  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   6.3  

>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 350 DVGDASDDEKDMSAADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGK 502
           +VG   DD   + A D   VW    E +++    I+   G ++++  +EGK
Sbjct: 78  NVGSIEDDSPYILAQDLVNVWKAACEDNYEPIREIHERLG-KQLLEKEEGK 127


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 113  LHGVIVFCVLWTVIIQNFIQD--VSDKWNYF 199
            LH  +V C L +VI QNF     +S  W +F
Sbjct: 1152 LHRKVVICFLISVINQNFWMSTLISQAWRFF 1182


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 193 IPFVTYVLDKILNNNSP*HTENYHTV*ISISNTVNLFIIHSR 68
           +PF    LD IL+  +P   EN+    I  S  +   +IH R
Sbjct: 75  VPFYNEALDLILDRTAPDTLENFDMDVIETSAQILYGLIHQR 116


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 332 ADAKHLDVGDASDDEKDMSAADAEGVWSP 418
           ADAK+ D   AS +++ M +    GV+SP
Sbjct: 424 ADAKNNDSSSASIEKRGMRSLAVNGVYSP 452


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 570 NKSRHTYRC*LGENYEKFKPNLKCNFG 650
           N  +  +R  L E+Y+KF PN K + G
Sbjct: 95  NDLKDRFRTILPEDYKKFYPNAKTHMG 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,682
Number of Sequences: 5004
Number of extensions: 53359
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)