Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0218
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30397| Best HMM Match : TEA (HMM E-Value=1.2e-08) 105 4e-23
SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 4e-20
SB_929| Best HMM Match : LEA_3 (HMM E-Value=7.8) 89 3e-18
SB_39315| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_48434| Best HMM Match : Phycoerythr_ab (HMM E-Value=3.1) 29 3.9
SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27) 28 6.7
SB_30727| Best HMM Match : DUF658 (HMM E-Value=0.39) 28 8.9
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 28 8.9
SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_30397| Best HMM Match : TEA (HMM E-Value=1.2e-08)
Length = 281
Score = 105 bits (252), Expect = 4e-23
Identities = 51/82 (62%), Positives = 64/82 (78%)
Frame = +2
Query: 392 ADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYEGTS**RGILN*GQGKTRTRK 571
A+ EG+W+ DIEQSFQEALAIYPPCGR+KI+LS + KMY + GK RTRK
Sbjct: 2 AEGEGLWAGDIEQSFQEALAIYPPCGRQKIMLSTKDKMYGRNELIARYILMKTGKMRTRK 61
Query: 572 QVSSHIQVLARRKLREIQAKLK 637
QV+SHIQVLAR+K+R+IQ+K+K
Sbjct: 62 QVASHIQVLARKKIRQIQSKIK 83
>SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 95.5 bits (227), Expect = 4e-20
Identities = 51/73 (69%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Frame = +2
Query: 368 DDEKDMS----AADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYEGTS**RGI 535
DD K S A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY
Sbjct: 52 DDSKAKSPTDMANDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARY 111
Query: 536 LN*GQGKTRTRKQ 574
+ GKTRTRKQ
Sbjct: 112 IKLRTGKTRTRKQ 124
Score = 35.5 bits (78), Expect = 0.044
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +1
Query: 496 GQDVRRNELIARYIKLRTGQNAYEKTSLVTHTGAS*AKTTRNSSQT*SA 642
G+ RNELIARYIKLRTG+ K A + +S+Q SA
Sbjct: 99 GKMYGRNELIARYIKLRTGKTRTRKQDQAARDKALQTMASMSSAQIVSA 147
>SB_929| Best HMM Match : LEA_3 (HMM E-Value=7.8)
Length = 165
Score = 89.4 bits (212), Expect = 3e-18
Identities = 44/52 (84%), Positives = 44/52 (84%), Gaps = 4/52 (7%)
Frame = +2
Query: 368 DDEKDMS----AADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYE 511
DD K S A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYE
Sbjct: 70 DDSKAKSPTDMANDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYE 121
>SB_39315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = +2
Query: 443 ALAIYPPCGRRKIILSDEGKMYEGTS**RGILN*GQGKTRTRKQVSSHIQVLARRKLREI 622
AL + P G R I D KMY + GK RTRKQV+SHIQVLAR+K+R+I
Sbjct: 12 ALELVDPPGCRNSITKD--KMYGRNELIARYILMKTGKMRTRKQVASHIQVLARKKIRQI 69
Query: 623 QAKLK 637
Q+K+K
Sbjct: 70 QSKIK 74
>SB_48434| Best HMM Match : Phycoerythr_ab (HMM E-Value=3.1)
Length = 350
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 320 GSGGADAKHLDVGDASDDEKDMSAADAEGVWSPDIEQSFQEAL 448
G+ GAD + + D +DEK +S +G S DI+ + +AL
Sbjct: 301 GAKGADKTYSMIKDVLEDEKMISVYSLDGEISQDIDLAILKAL 343
>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
Length = 2056
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 359 DASDDEKDMSAADAEGVWSPDIEQSFQE 442
+ S +K +S+ A G W P ++QSFQ+
Sbjct: 44 EVSRAKKRLSSIRAYGYWDPSLQQSFQK 71
>SB_30727| Best HMM Match : DUF658 (HMM E-Value=0.39)
Length = 381
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 536 LN*GQGKTRTRKQVSSHIQVLARRKLREIQAKL 634
+N + +TR K V++H QVL ++++R +Q +L
Sbjct: 120 INDQRKRTRGSKDVANHKQVLVQKQIRVLQNRL 152
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 284 PWSTPAGAPDTNGSGGADA 340
P TPA APD+ GS ADA
Sbjct: 764 PNETPAAAPDSEGSTSADA 782
>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 263 AAGTIASPWSTPAGAPDTNGSGGADAKHLDVGDASDDEKDMSAAD 397
AAG A G+ G+GG+ + D D DD+ D +AAD
Sbjct: 90 AAGAGAGGNVGGGGSGGVGGNGGSGSDDDDDDDDDDDDDDAAAAD 134
>SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -1
Query: 599 LAPVCVTRLVFSY---AFCPVLSLIYLAINSFLRTSCPRRR 486
L V +VFS +FC +L+L+ +A++ +L CP ++
Sbjct: 104 LGSVLCKGMVFSQDVSSFCSILTLVAIAMDRYLAIRCPYKK 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,128,311
Number of Sequences: 59808
Number of extensions: 439134
Number of successful extensions: 1439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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