Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0218
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.0  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 208 VRSRCIRPGTTLISRARARSRHHCVSVEHAGRRARH 315
           + + C+   +  ISR R   R  C+S    GR   H
Sbjct: 28  ISAGCVSRISNRISRNRVLLRGQCISSRRNGRHNVH 63


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 456 TRPVDDAKLFSPTRAR 503
           TRPV   ++ SP RAR
Sbjct: 168 TRPVSYPQIMSPRRAR 183


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 248 RERALAAGTIASPWSTPAG 304
           R   L +GT+ +PWS  +G
Sbjct: 273 RRGILQSGTLNAPWSYMSG 291


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 248 RERALAAGTIASPWSTPAG 304
           R   L +GT+ +PWS  +G
Sbjct: 273 RRGILQSGTLNAPWSYMSG 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,401
Number of Sequences: 438
Number of extensions: 4017
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)