Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0218
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11910.2 68415.m01278 expressed protein                             29   4.2  
At2g11910.1 68415.m01277 expressed protein                             29   4.2  
At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2...    28   5.5  
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    28   7.3  
At4g17620.1 68417.m02636 glycine-rich protein                          28   7.3  
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    27   9.6  

>At2g11910.2 68415.m01278 expressed protein
          Length = 168

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 296 PAGAPDTNGSGGADAKHLDVGDASDDEKDMSAADAE 403
           P   P TNG GG+D +  D  +  +D++D    D E
Sbjct: 113 PEDDPVTNGGGGSDDEDDDDEEGDNDDEDEDNEDEE 148


>At2g11910.1 68415.m01277 expressed protein
          Length = 168

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 296 PAGAPDTNGSGGADAKHLDVGDASDDEKDMSAADAE 403
           P   P TNG GG+D +  D  +  +D++D    D E
Sbjct: 113 PEDDPVTNGGGGSDDEDDDDEEGDNDDEDEDNEDEE 148


>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
           (YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
           1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
           cytochrome P450 (CYP76C2), partial cds GI:13122289
          Length = 512

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 435 SKRRWRYTRPVDDAKLFSPTRARCTK 512
           S  RWR  R +   +LFSP R   TK
Sbjct: 127 SSSRWRLLRKLSATQLFSPQRIEATK 152


>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 433 LPRGAGDIPALWTTQNYSLRRGQDVRRNELIARYIKLR 546
           + +G   IP  WT   +   RG DVR+N L   Y  LR
Sbjct: 1   MAQGRERIPERWTYDVFVSFRGADVRKNFLSHLYDSLR 38


>At4g17620.1 68417.m02636 glycine-rich protein
          Length = 544

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +2

Query: 173 DVSDKWNYFGDQYGHDASGRVLR*SRERALAAGTIASPWSTPAGAPDTNGSGGADAKH-- 346
           D   K N   D +G D S    R SR ++ ++G  +S  S+ + +  ++ + G D +   
Sbjct: 2   DSPPKKNPMDDLFGED-SDNDSRSSRSKSSSSGNASSSSSSSSSSSSSSSAAGGDGEGDG 60

Query: 347 --LDVGDASDDEKDMSAADAE 403
              D G ASD     S    E
Sbjct: 61  GGADSGSASDSGSGSSGGKEE 81


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 245 SRERALAAGTIASPWSTPAGAPDTNG 322
           SR R LA     SPW  P+ +P  NG
Sbjct: 83  SRRRNLAESASFSPWPAPSPSPFPNG 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,977,336
Number of Sequences: 28952
Number of extensions: 291061
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)