Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0217
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.1  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.6  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    25   8.4  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   8.4  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 367 NRPSPG**TQ*D*TDV*TSASENQVSLGSKSARSSSVIGKS 245
           N P PG  T    ++V ++ SEN    GSKS  SSS++  S
Sbjct: 49  NGPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNS 89


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 316 TSASENQVSLGSKSARSSSVIGKSHDEPKTAPKSAAEREIGKRTTR 179
           +S S +  S  SKS+ SSS   KS     ++ KS+A     K +++
Sbjct: 175 SSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSK 220


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 72  LIEIMFKNALQLPRIDN*VFSVTSMNKFKIPPYYFRRVVLLPISR 206
           L++  FKN ++  ++ N  F   +++   +PP + +   +L   R
Sbjct: 104 LLDDCFKNRIEYAKLQNYNFEFVNVSSLVVPPVWGKMPAILQTMR 148


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 23/93 (24%), Positives = 43/93 (46%)
 Frame = -1

Query: 325 DV*TSASENQVSLGSKSARSSSVIGKSHDEPKTAPKSAAEREIGKRTTRRK*YGGILNLF 146
           DV  +++++     SKS+R SS  G SH      P S++   +      +  +G I  +F
Sbjct: 8   DVLETSTKDTERPNSKSSRLSSTSGSSH------PSSSSRLTVRSAVPEKSAFGSIEFIF 61

Query: 145 IDVTLKT*LSIRGSCNAFLNIISINFQNYQHIK 47
               + + L+I  +C     + S    NY++I+
Sbjct: 62  YFSVILSILTI--ACFKIHYVSSPKHPNYKNIE 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,643
Number of Sequences: 5004
Number of extensions: 66147
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)