Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0217
(733 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 29 4.2
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 28 5.6
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 28 5.6
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 28 5.6
At4g13980.1 68417.m02162 heat shock transcription factor family ... 28 7.3
At1g33880.1 68414.m04200 avirulence-responsive family protein / ... 28 7.3
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 27 9.7
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 27 9.7
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea... 27 9.7
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -2
Query: 540 ISQVPEFEAMHEVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKII 364
+S VP+ + +V +LKG + +++ + S D L S ++ W TDG ++
Sbjct: 83 LSGVPKLWEVPQVTNKIVVLKGHKEHVTDVVFSSVDDECLATASTDRTEKIWKTDGTLL 141
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 493 VLPHFMHRLKLRNLTNIGLGLLVLEPNR 576
++P F+H ++RN + +G +LVL P R
Sbjct: 213 LIPGFLHLQRIRNDSRMGPTILVLSPTR 240
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 493 VLPHFMHRLKLRNLTNIGLGLLVLEPNR 576
++P F+H ++RN + +G +LVL P R
Sbjct: 213 LIPGFLHLQRIRNDSRMGPTILVLSPTR 240
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 493 VLPHFMHRLKLRNLTNIGLGLLVLEPNR 576
++P F+H ++RN + +G +LVL P R
Sbjct: 213 LIPGFLHLQRIRNDSRMGPTILVLSPTR 240
>At4g13980.1 68417.m02162 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 466
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 411 SGPPKRHHDVIWSEILK**P*NPSGVSCSSTLHASPQTQEPD 536
+ PP R +DV W + L P + SST +P ++ +
Sbjct: 406 AAPPARVNDVFWEQFLTERPGSSDNEEASSTYRGNPYEEQEE 447
>At1g33880.1 68414.m04200 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 234
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 343 FIIREKDDYFPICCPAALNAEMR 411
F +E +DYFP CCP L +R
Sbjct: 150 FEAKEFEDYFPECCPEFLMRVLR 172
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 292 SLGSKSARSSSVIGK-SHDEPKTAPKSAAE 206
S+GS S+ + V GK S+DE KT+P+ E
Sbjct: 413 SVGSSSSDTVKVDGKESYDETKTSPEKGVE 442
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 493 VLPHFMHRLKLRNLTNIGLGLLVLEPNR 576
++P FMH ++ N + +G +LVL P R
Sbjct: 284 LIPGFMHLQRIHNDSRMGPTILVLSPTR 311
>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
Length = 1846
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 450 LTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDN 346
L +S+ +FLE HF R GK+ +L+ +N
Sbjct: 79 LLESQESLFLEENGHFSNARGSHNSGKLCILIREN 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,288,836
Number of Sequences: 28952
Number of extensions: 348925
Number of successful extensions: 884
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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