Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0215
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   3.8  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   3.8  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 186 RQ*AVTLQSWLCSTGENPHPS 124
           R+   TL++WL    +NP+P+
Sbjct: 93  RESTATLKAWLNEHKKNPYPT 113


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 17/75 (22%), Positives = 32/75 (42%)
 Frame = +1

Query: 400 CHGQLSCRSSQRKLYLTQNTTQQSRSSCVAHDGRESADSTYEMVGGLDKQIKEIKEVIEL 579
           CH  LSC+S+ +  Y T   T +    C       +     +   G+ +    ++ + + 
Sbjct: 140 CHRVLSCKSALQMHYRTH--TGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQC 197

Query: 580 PVKHPELFDALGIAQ 624
           PV H +  +AL + Q
Sbjct: 198 PVCHKKFTNALVLQQ 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,746
Number of Sequences: 336
Number of extensions: 3997
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)