Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0214
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.53 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   8.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 364 CTYTKFVHYFCLIN*YSRYS*RCLFS*NFSLKIIVYQTMSLLPLVCFLYFKKLLFR*EAV 543
           C +  F  +F L   Y  Y+   L    +     +  T+ LL L+C  YF   LF    +
Sbjct: 87  CPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCI 146

Query: 544 FY 549
           +Y
Sbjct: 147 YY 148



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 454 LKIIVYQTMSLLPLVCFLYFKKLLFR*EAVFYC 552
           L  I Y   +L+ L+C  YF +        FYC
Sbjct: 282 LLCIYYFYCALIILLCIYYFCRAFIIFPTHFYC 314


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 780 KCXQNPCTNMADFYCPSG 727
           KC    CT +  FYC  G
Sbjct: 63  KCLAFFCTALVIFYCQEG 80


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 780 KCXQNPCTNMADFYCPSG 727
           KC    CT +  FYC  G
Sbjct: 296 KCLAFFCTALVIFYCQEG 313


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 780 KCXQNPCTNMADFYCPSG 727
           KC    CT +  FYC  G
Sbjct: 296 KCLAFFCTALVIFYCQEG 313


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 786 SGKCXQNPCTNMADFYCPSGHXLEKLTYSV 697
           S +  Q  C N++  YC  G+    + +S+
Sbjct: 32  SSQKGQKTCLNLSINYCICGYIFSAILFSL 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,054
Number of Sequences: 336
Number of extensions: 3584
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)