Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0214
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical
           protein Y46H3A.4 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 337 VGSCSNCKRCTYTKFVHYF 393
           +G C+N K CTYT+   YF
Sbjct: 257 LGFCTNTKMCTYTQHFTYF 275


>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 766 PLYQYGGFLLPVWPXVRK 713
           P+YQ GG ++P W  +R+
Sbjct: 763 PIYQRGGTIIPTWQRIRR 780


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 766 PLYQYGGFLLPVWPXVRK 713
           P+YQ GG ++P W  +R+
Sbjct: 777 PIYQRGGTIIPTWQRIRR 794


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,749
Number of Sequences: 27780
Number of extensions: 302136
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)