Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0214
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   4.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.6  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 592 NIRKYNSLLFKLLYNKKQLPIGTKVF 515
           N + YN  L+  + N +Q+P+   V+
Sbjct: 328 NYKNYNKKLYYNIINIEQIPVPVPVY 353


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 113 ITILSKCNFDSYYS 72
           +T+ +KC + SYYS
Sbjct: 629 VTLSTKCPYPSYYS 642


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = -1

Query: 765 PCTNMADFYCPSGHXLEKLTYSVRXSVKFPSVFVKNS 655
           PC  M   YC      +K   S+R   K P   +  S
Sbjct: 204 PCIVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSMAKS 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,648
Number of Sequences: 438
Number of extensions: 4286
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)