Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0213
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 37 0.003
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 33 0.047
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 29 1.0
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.8
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 27 2.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.1
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 4.1
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 4.1
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 5.4
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 7.2
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 26 7.2
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 9.5
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 37.1 bits (82), Expect = 0.003
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +2
Query: 377 GTDRKYCFNGFSASLFTVNAVFLFDYLKVTN-KNILINEFIQLSMFLIYWPFF*VL--FC 547
GT Y NGF+++ + V YL + + + F+QL MF Y F VL FC
Sbjct: 97 GTRLLYKINGFNSACLILGVVCTSIYLLGASCMEFIWDNFLQL-MFAAY-VFSVVLCTFC 154
Query: 548 ISKAKDWQEKELNAYGKTGYILYDFFMGCEIHPHIKGLNMK 670
++ + +++L G +G IL+D+F+G ++P I ++K
Sbjct: 155 YVQSF-FGKQQLAKGGTSGNILFDWFIGRSLNPRIGNFDIK 194
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = +2
Query: 635 EIHPHIKGLNMKILISRISKYHIFDFNIGLIFSRGPSTFN 754
E+ P ++G+++ + +++SK +I + I ++S GPST N
Sbjct: 89 ELKPELQGMDIADIWTQVSKANISERKIRCVYSEGPSTAN 128
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 28.7 bits (61), Expect = 1.0
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = -2
Query: 603 PVLPYAFNSFSCQSFAFEIQNNTQKNGQYIRNIESCINSFMRIFLFVTFK*SNKNTAFTV 424
P LP + S++C + +I NT NG R S + SFM T SN+ +A+
Sbjct: 162 PSLPSS-PSYNCPTTLRKIHTNTSSNGTSRR--VSGLGSFMAQNSSETS--SNRTSAYLP 216
Query: 423 NNEAENPLKQYFLSVPSMPSA 361
+ + K+ +++ SMPS+
Sbjct: 217 GSSTDEQEKRSSVTLASMPSS 237
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 676 QNFHIQSLDVRMNFTTHEKIIQYIASF 596
++FH+ SLD R + TT +K +Y + F
Sbjct: 60 ESFHLPSLDPRASTTTSQKFQEYRSDF 86
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 130 ICFKVLTLLLIGVASFLVIGLDLLXXXXXXXXENVSTDLLL 8
+ F L L+ IG+ASF + G L +V T +LL
Sbjct: 80 VVFLYLALITIGIASFFIYGSSLTQKFSIIDWISVLTSVLL 120
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 551 SKAKDWQEKELNAYGKTGYILYDFFMGCEIHPHIKGLNMKILI 679
++A+D + K+ +A K G +LYDF +K NM+++I
Sbjct: 496 ARAEDHKPKDSSAGQKMGTVLYDFIAEAADELTVKA-NMRVVI 537
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 471 LFVTFK*SNKNTAFTVNNEAENPLKQYFLS 382
LF T +N+ FT +AEN + Y+LS
Sbjct: 332 LFYTIVFTNEMRLFTTTEDAENAERMYYLS 361
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 569 QEKELNAYGKTGYILYDFFMGCEIHP-HIKGLNMKILISRISK 694
QEK L ++ T + L D+ + CEI I + KI + ++SK
Sbjct: 714 QEKALQSWTDTAHGLLDYLVHCEIDTFFIAAVAFKIQMLQLSK 756
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 5.4
Identities = 24/66 (36%), Positives = 33/66 (50%)
Frame = -1
Query: 256 FATSILVEHLLLHEISIANTVIGMRKIKIAEPNLPPNSHLLDICFKVLTLLLIGVASFLV 77
+ATS H LL I++AN +I IK PP + L D+ F L L + +LV
Sbjct: 120 YATSAFAGHSLLSTIAVANNIIS-AAIK------PPLARLSDV-FGRLEAFLFSLLLYLV 171
Query: 76 IGLDLL 59
GL L+
Sbjct: 172 -GLILM 176
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 176 NFPHTNHSVCYTYFM*Q*MLY*YRCSKLKAFTP 274
+F + +HS+C T F+ + Y + C+ L+ + P
Sbjct: 456 SFENISHSLCTTEFILSRVSYEWLCNALEVYCP 488
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 74 NYKEAGYTNQKQC*HFETNIKQMGIWWEIGLSN-FNFPHTNHSVCYTYFM 220
N++ + Q QC + K+ I + LSN F F TN S+C+ F+
Sbjct: 378 NFEYSDIPQQFQCDYVPNVAKESRI--NVALSNSFGFGGTNASLCFKKFL 425
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 187 MRKIKIAEPNLPPNSHL 137
M+K K EPN+P N+H+
Sbjct: 645 MKKRKAVEPNVPVNTHV 661
>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 94
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +3
Query: 531 FEYYFVSQKQRTGRRKS*MHMVKLAIYCMIFSWVVK 638
F + +++R+ RK+ H++ ++FSW+V+
Sbjct: 9 FASFRTEEEERSYSRKAFFHLIGYITCSVLFSWLVR 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,609
Number of Sequences: 5004
Number of extensions: 72473
Number of successful extensions: 199
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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