Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0213
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)                48   7e-06
SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0)                  38   0.009
SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2)                   29   5.8  
SB_28044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
 Frame = +2

Query: 284 YNSLAFII-AQILVQSVFLAVPVMGTIADG---MDGTDRKYCFNGFSASLFTVNAVFLFD 451
           +N  A ++ A  ++  V L +   G +  G    DG+   Y  N   A L T+   F   
Sbjct: 325 FNPQAHLVYAAWMLYQVLLYMLPFGNVIKGPQLADGSQLDYRINSLFALLGTIALFFALM 384

Query: 452 YLKVTNKNILINEFIQLSMFLIYWPFF*VLFCISKAKDWQEKELNAYGKTGYILYDFFMG 631
             K+     + + F+ L    I W     +F   KAK  Q   L++ G TG  +YDFFMG
Sbjct: 385 ANKIP-VTFVYDNFLSLITATILWSVVISVFLFVKAKR-QGSGLSSGGNTGNAIYDFFMG 442

Query: 632 CEIHPHIKGLNMK 670
            +++P I   + K
Sbjct: 443 HQLNPRIGNFDFK 455



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 138 KWEFGGRLGSAILIFLIPITVFAILISCSNK 230
           ++EFGG  G+ + IF +P+ VFA    C  K
Sbjct: 275 EYEFGGPFGAFVFIFGLPVCVFAFYFFCVGK 305


>SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0)
          Length = 486

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
 Frame = +2

Query: 272 PWFSYNSLAFIIAQILVQSV-FLAVPVMGTIADGMD---GTDRKYCFNGFSASLFTVNAV 439
           P  + + +   +  + +Q V +LA+P  G IA G     G    Y  NG +A +FT    
Sbjct: 117 PEVTLSGVGLFLTWLTLQLVLYLALP--GRIATGNPTPAGNILSYKCNGLNAWIFTHALF 174

Query: 440 FLFDYLKVTNKNILINEFIQLSMFLIYWPFF*VLFCISKAKDWQ-EKELNAYGKTGYILY 616
               Y  +    ++ N +  L +           F   KA  +   KE   +  +G   Y
Sbjct: 175 IALAYFDLMKMTVIYNYWGSLLVLANILGILLTAFVYVKAHYFPTHKEDRCF--SGSFFY 232

Query: 617 DFFMGCEIHPHIKGLNMKILIS 682
           DF+MG E +P I  L+ K+  +
Sbjct: 233 DFYMGIEANPRIGNLDFKLFFN 254


>SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2)
          Length = 597

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 192 ITVFAILISCSNKCSTSIDVANLRLSHHGSVIILLPSSL 308
           I + ++L + S+ C T+IDV N    HH  V  LL SSL
Sbjct: 99  IIMMSLLENTSSSCYTTIDVINTTRRHH-YVTPLLMSSL 136


>SB_28044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 152 WEIGLSNFNFPHTNHSV 202
           WE+GLSN  +PHT  +V
Sbjct: 40  WELGLSNIIYPHTCQNV 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,045,344
Number of Sequences: 59808
Number of extensions: 473347
Number of successful extensions: 1346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)