Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0213
         (799 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023819-1|AAZ86740.1|  741|Drosophila melanogaster SD06601p pro...    41   0.002
AJ606680-1|CAE54809.1|  741|Drosophila melanogaster lamin B rece...    41   0.002
AY070562-1|AAL48033.1|  716|Drosophila melanogaster LD38760p pro...    39   0.007
AE013599-3273|AAM71016.1|  716|Drosophila melanogaster CG17952-P...    39   0.007
AE013599-3272|AAF46760.2|  716|Drosophila melanogaster CG17952-P...    39   0.007
AE013599-3271|AAM71015.1|  741|Drosophila melanogaster CG17952-P...    39   0.007

>BT023819-1|AAZ86740.1|  741|Drosophila melanogaster SD06601p
           protein.
          Length = 741

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = +3

Query: 75  ITRKLATPIRSSVSTLKQISSKWEFGGRLGSAILIFLIPITVFAILISCSNKCSTSIDVA 254
           +TRK ATP   S    +Q+ +  EFGG LG+ +L+ L+P  V+ +  SC+ + +      
Sbjct: 287 VTRKSATPAEISC---RQLKAPREFGGWLGAFLLLLLLPTAVYYLTWSCTARNACQFKHL 343

Query: 255 NL 260
           NL
Sbjct: 344 NL 345


>AJ606680-1|CAE54809.1|  741|Drosophila melanogaster lamin B
           receptor protein.
          Length = 741

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = +3

Query: 75  ITRKLATPIRSSVSTLKQISSKWEFGGRLGSAILIFLIPITVFAILISCSNKCSTSIDVA 254
           +TRK ATP   S    +Q+ +  EFGG LG+ +L+ L+P  V+ +  SC+ + +      
Sbjct: 287 VTRKSATPAEISC---RQLKAPREFGGWLGAFLLLLLLPTAVYYLTWSCTARNACQFKHL 343

Query: 255 NL 260
           NL
Sbjct: 344 NL 345


>AY070562-1|AAL48033.1|  716|Drosophila melanogaster LD38760p
           protein.
          Length = 716

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +3

Query: 75  ITRKLATPIRSSVSTLKQISSKWEFGGRLGSAILIFLIPITVFAILISCSNKCSTSIDVA 254
           +TRK ATP   S    +Q+ +  EFGG LG+ + + L+P  V+ +  SC+ + +      
Sbjct: 262 VTRKSATPAEISC---RQLKAPREFGGWLGAFLFLLLLPTAVYYLTWSCTARNACQFKHL 318

Query: 255 NL 260
           NL
Sbjct: 319 NL 320


>AE013599-3273|AAM71016.1|  716|Drosophila melanogaster CG17952-PB,
           isoform B protein.
          Length = 716

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +3

Query: 75  ITRKLATPIRSSVSTLKQISSKWEFGGRLGSAILIFLIPITVFAILISCSNKCSTSIDVA 254
           +TRK ATP   S    +Q+ +  EFGG LG+ + + L+P  V+ +  SC+ + +      
Sbjct: 262 VTRKSATPAEISC---RQLKAPREFGGWLGAFLFLLLLPTAVYYLTWSCTARNACQFKHL 318

Query: 255 NL 260
           NL
Sbjct: 319 NL 320


>AE013599-3272|AAF46760.2|  716|Drosophila melanogaster CG17952-PA,
           isoform A protein.
          Length = 716

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +3

Query: 75  ITRKLATPIRSSVSTLKQISSKWEFGGRLGSAILIFLIPITVFAILISCSNKCSTSIDVA 254
           +TRK ATP   S    +Q+ +  EFGG LG+ + + L+P  V+ +  SC+ + +      
Sbjct: 262 VTRKSATPAEISC---RQLKAPREFGGWLGAFLFLLLLPTAVYYLTWSCTARNACQFKHL 318

Query: 255 NL 260
           NL
Sbjct: 319 NL 320


>AE013599-3271|AAM71015.1|  741|Drosophila melanogaster CG17952-PC,
           isoform C protein.
          Length = 741

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +3

Query: 75  ITRKLATPIRSSVSTLKQISSKWEFGGRLGSAILIFLIPITVFAILISCSNKCSTSIDVA 254
           +TRK ATP   S    +Q+ +  EFGG LG+ + + L+P  V+ +  SC+ + +      
Sbjct: 287 VTRKSATPAEISC---RQLKAPREFGGWLGAFLFLLLLPTAVYYLTWSCTARNACQFKHL 343

Query: 255 NL 260
           NL
Sbjct: 344 NL 345


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,446,181
Number of Sequences: 53049
Number of extensions: 690799
Number of successful extensions: 1555
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)