Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0213
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03530.1 68415.m00313 F-box family protein-related similar to...    28   6.2  
At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ...    28   6.2  
At3g14140.1 68416.m01788 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   8.3  
At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP c...    28   8.3  
At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP c...    28   8.3  

>At2g03530.1 68415.m00313 F-box family protein-related similar to A3
           protein (Swiss-Prot:Q41706)(unknown function) [Vigna
           unguiculata]; contains 9 transmembrane domains;
           supported by tandem duplication of F-box family protein
           (GI:3805763) (TIGR_Ath1:At2g07140) [Arabidopsis
           thaliana]
          Length = 385

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 254 KLKAFTPWFSYNSLAFIIAQILVQSVFLAVPVMG 355
           KL  +T +F ++   FIIA IL   VFL  PV+G
Sbjct: 254 KLVVYTAFFYFSVSCFIIALIL-NVVFLYYPVLG 286


>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 727

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 507 CFLYIGHFFEYYFVSQKQ 560
           CFLY+ HF EYY +  K+
Sbjct: 304 CFLYLAHFPEYYEIHVKR 321


>At3g14140.1 68416.m01788 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein low similarity to alkB protein
           [Escherichia coli][SP|P05050], alkB [Caulobacter
           crescentus][GI:2055386]; contains Pfam domain PF03171
           2OG-Fe(II) oxygenase superfamily
          Length = 452

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 383 DRKYCFNGFSASLFTVNAVFLFDYLKVTNKNILINEFIQLSM 508
           ++K    GFS  +     V L +YL + N+ +++N+  QL +
Sbjct: 225 EKKKAAKGFSGIVIRPGMVLLKNYLSINNQVMIVNKCRQLGL 266


>At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 123 KQISSKWEFGGRLGSAILIFLIPITVFAILISCSNKCSTSIDVANLRLSHHGSVIILLPS 302
           K++         + SA+  ++ P  V A+++ CS+    S+D+ +L LS H   + LL S
Sbjct: 153 KRLQDPQRLADDICSALQHWVKPAGV-AVVLECSHIHFPSLDLDSLNLSSHRGFVKLLVS 211

Query: 303 S 305
           S
Sbjct: 212 S 212


>At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 123 KQISSKWEFGGRLGSAILIFLIPITVFAILISCSNKCSTSIDVANLRLSHHGSVIILLPS 302
           K++         + SA+  ++ P  V A+++ CS+    S+D+ +L LS H   + LL S
Sbjct: 153 KRLQDPQRLADDICSALQHWVKPAGV-AVVLECSHIHFPSLDLDSLNLSSHRGFVKLLVS 211

Query: 303 S 305
           S
Sbjct: 212 S 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,531,209
Number of Sequences: 28952
Number of extensions: 344869
Number of successful extensions: 834
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)