Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0212
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   138   4e-34
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   138   4e-34
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   2.8  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   4.9  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  138 bits (334), Expect = 4e-34
 Identities = 61/81 (75%), Positives = 68/81 (83%)
 Frame = +3

Query: 30  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSE 209
           RPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+K   VD+FPLC+HLVS+EYEQ+ SE
Sbjct: 4   RPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSE 63

Query: 210 ALEAGRICCNKYLVKTAXRIS 272
           ALEA RIC NKYLVK   + S
Sbjct: 64  ALEAARICANKYLVKIGGKDS 84



 Score =  124 bits (300), Expect = 6e-30
 Identities = 57/83 (68%), Positives = 65/83 (78%)
 Frame = +2

Query: 260 GKDQFHIRMRLHPFHVIRINKMXSCAGXDRLQTGMRGAFGKPQGTVARVRIGQPXMSVRS 439
           GKD FH+R+R HPFHV+RINKM SCAG DRLQTGMR AFGKP G VARV IGQ  MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 440 SDRWKAQXIXALXRAKFKFPGRQ 508
            D  +A  I AL R ++KFPG+Q
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQ 163


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  138 bits (334), Expect = 4e-34
 Identities = 61/81 (75%), Positives = 68/81 (83%)
 Frame = +3

Query: 30  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSE 209
           RPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+K   VD+FPLC+HLVS+EYEQ+ SE
Sbjct: 4   RPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSE 63

Query: 210 ALEAGRICCNKYLVKTAXRIS 272
           ALEA RIC NKYLVK   + S
Sbjct: 64  ALEAARICANKYLVKIGGKDS 84



 Score =  124 bits (299), Expect = 8e-30
 Identities = 57/83 (68%), Positives = 65/83 (78%)
 Frame = +2

Query: 260 GKDQFHIRMRLHPFHVIRINKMXSCAGXDRLQTGMRGAFGKPQGTVARVRIGQPXMSVRS 439
           GKD FH+R+R HPFHV+RINKM SCAG DRLQTGMR AFGKP G VARV IGQ  MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 440 SDRWKAQXIXALXRAKFKFPGRQ 508
            D  +A  I AL R ++KFPG+Q
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQ 163


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 394  STLRLAKRTTHPSLEPIXSS-A*XHFIDADNVERVKSHAD 278
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 228 ICCNKYLVKTAXRISSISA*DFTL 299
           ICC KY V T  R + I    FTL
Sbjct: 9   ICCAKYFVNTKSRFNEILPPRFTL 32


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 269  DPXRSLYEVL-IAADTSCLQSL*XQLFIFVGHQVHAQWKVVNGXXLLTQIEDT 114
            DP RS Y V+ +      L+ L     IFVGH +   ++++N      Q+ DT
Sbjct: 963  DPDRSPYNVVPLKVAYKKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDT 1015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,740
Number of Sequences: 5004
Number of extensions: 35321
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)