Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0212
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 128 3e-30
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 128 3e-30
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 128 3e-30
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 2.1
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 3.7
09_06_0319 - 22293869-22293906,22294539-22295808 27 6.5
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 27 8.7
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 27 8.7
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 128 bits (309), Expect = 3e-30
Identities = 60/86 (69%), Positives = 67/86 (77%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMXSCAGXDRLQTGMRGAFGKPQGTVARVRIGQPXMS 430
K+ GKD FH+R+R+HPFHV+RINKM SCAG DRLQTGMRGAFGKPQGT ARV IGQ +S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 431 VRSSDRWKAQXIXALXRAKFKFPGRQ 508
VR + AL RAKFKFPGRQ
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQ 163
Score = 127 bits (307), Expect = 4e-30
Identities = 56/79 (70%), Positives = 63/79 (79%)
Frame = +3
Query: 30 RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSE 209
RPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K VD+FP CVHLVS E E + SE
Sbjct: 4 RPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSE 63
Query: 210 ALEAGRICCNKYLVKTAXR 266
ALEA RI CNKY+ K A +
Sbjct: 64 ALEAARIACNKYMTKNAGK 82
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 128 bits (309), Expect = 3e-30
Identities = 56/78 (71%), Positives = 63/78 (80%)
Frame = +3
Query: 33 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSEA 212
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K + DDFPLCVHLVS E E + SEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 213 LEAGRICCNKYLVKTAXR 266
LEA RI CNKY+ K A +
Sbjct: 372 LEAARIACNKYMAKHAGK 389
Score = 126 bits (303), Expect = 1e-29
Identities = 60/86 (69%), Positives = 65/86 (75%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMXSCAGXDRLQTGMRGAFGKPQGTVARVRIGQPXMS 430
K GKD FH+R+ HP+HV+RINKM SCAG DRLQTGMRGAFGKP GT ARVRIGQ +S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 431 VRSSDRWKAQXIXALXRAKFKFPGRQ 508
VR D A AL RAKFKFPGRQ
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQ 470
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 128 bits (308), Expect = 3e-30
Identities = 60/86 (69%), Positives = 65/86 (75%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMXSCAGXDRLQTGMRGAFGKPQGTVARVRIGQPXMS 430
K GKD FH+R+R+HPFHV+RINKM SCAG DRLQTGMRGAFGKPQGT ARV IGQ +S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 431 VRSSDRWKAQXIXALXRAKFKFPGRQ 508
VR AL RAKFKFPGRQ
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQ 159
Score = 115 bits (277), Expect = 2e-26
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = +3
Query: 42 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSEALEA 221
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K VD+F CVHLVS E E + SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 222 GRICCNKYLVKTAXR 266
RI CNKY+ K+A +
Sbjct: 64 ARIACNKYMTKSAGK 78
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 417 CPMRTRATVP*GLPNAPRIPVWSLSXPAH 331
CP+ + + VP LP++P P++S + P +
Sbjct: 1627 CPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 377 GKPQGTVARVRIGQPXMSVRSSD 445
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 377 GKPQGTVARVRIGQPXMSVRSSD 445
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 144 TVDDFPLC-VHLVSDEYEQLXSEALEAGRICCNKYLVK 254
T D P C +HL SD Y E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 311 G*RGKGEVSCGYGTD--PXRSLYEVLIAADTSCLQSL 207
G R E SC Y + P +L E+L+ A+T C L
Sbjct: 231 GMRAVSEFSCTYSLEDLPLETLLEILVFANTFCCDRL 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,450,936
Number of Sequences: 37544
Number of extensions: 259421
Number of successful extensions: 523
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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