Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0212
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         75   4e-14
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              29   1.7  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              29   2.9  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   5.1  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 36/49 (73%), Positives = 39/49 (79%)
 Frame = +2

Query: 362 MRGAFGKPQGTVARVRIGQPXMSVRSSDRWKAQXIXALXRAKFKFPGRQ 508
           MRGAFGKPQGTVARV IGQ  +S+R+ D  KA  I AL RAKFKFPGRQ
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQ 49


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -3

Query: 413 QCEHVLQYPEACQTHHASQSGAYQXQRMXTFY*CG*RGKGEVSCGYG 273
           +C  V Q P AC   + S  GA +       Y C    K  V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 370 CVWQASGYCSTCSHWTAXHV 429
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 48  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSEALEAGR 227
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 228 IC 233
           +C
Sbjct: 500 MC 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,234
Number of Sequences: 59808
Number of extensions: 292709
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)