Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0212
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   132   1e-31
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    27   5.9  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  132 bits (319), Expect = 1e-31
 Identities = 58/79 (73%), Positives = 63/79 (79%)
 Frame = +3

Query: 30  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSE 209
           RPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG K   VD FP CVH++S+E E L SE
Sbjct: 4   RPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSE 63

Query: 210 ALEAGRICCNKYLVKTAXR 266
           ALEA RIC NKY+VK   +
Sbjct: 64  ALEAARICANKYMVKNCGK 82



 Score =  123 bits (296), Expect = 9e-29
 Identities = 58/86 (67%), Positives = 64/86 (74%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMXSCAGXDRLQTGMRGAFGKPQGTVARVRIGQPXMS 430
           K+CGKD FH+R+R HPFHV RINKM SCAG DRLQTGMRGA+GKPQG VARV IG    S
Sbjct: 78  KNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFS 137

Query: 431 VRSSDRWKAQXIXALXRAKFKFPGRQ 508
           +R  +      I A  RAKFKFPGRQ
Sbjct: 138 MRIKEGNVKHAIEAFRRAKFKFPGRQ 163


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 384 GLPNAPRIPVWSLSXPA 334
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 24/73 (32%), Positives = 34/73 (46%)
 Frame = -3

Query: 266 PXRSLYEVLIAADTSCLQSL*XQLFIFVGHQVHAQWKVVNGXXLLTQIEDTDLGIRYTPT 87
           P ++  E  ++AD S LQ    QL   + H V   + +     LL  I  T +   Y+  
Sbjct: 226 PIKNHLETALSADDSPLQ-FDYQLQYMI-HNVFEHYVIP--VALLCSILGTIVRFCYSDD 281

Query: 86  EPRFRIRFIFAVP 48
           E  F  RF+FAVP
Sbjct: 282 ENLFGTRFVFAVP 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,812
Number of Sequences: 27780
Number of extensions: 210652
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)