Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0212
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   127   4e-30
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   127   4e-30
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   127   5e-30
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   4.2  
At4g24120.1 68417.m03462 transporter, putative similar to iron-p...    27   7.3  
At2g30040.1 68415.m03653 protein kinase family protein contains ...    27   7.3  
At1g53180.1 68414.m06027 expressed protein                             27   7.3  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   9.6  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  127 bits (307), Expect = 4e-30
 Identities = 56/79 (70%), Positives = 64/79 (81%)
 Frame = +3

Query: 30  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSE 209
           RPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G K   VD+FP CVHLVS E E + SE
Sbjct: 4   RPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSE 63

Query: 210 ALEAGRICCNKYLVKTAXR 266
           ALEA RI CNKY+VK+A +
Sbjct: 64  ALEAARIACNKYMVKSAGK 82



 Score =  125 bits (301), Expect = 2e-29
 Identities = 59/86 (68%), Positives = 64/86 (74%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMXSCAGXDRLQTGMRGAFGKPQGTVARVRIGQPXMS 430
           K  GKD FH+R+R+HPFHV+RINKM SCAG DRLQTGMRGAFGK  GT ARV IGQ  +S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQXIXALXRAKFKFPGRQ 508
           VR  D        AL RAKFKFPGRQ
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQ 163


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  127 bits (307), Expect = 4e-30
 Identities = 56/79 (70%), Positives = 64/79 (81%)
 Frame = +3

Query: 30  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSE 209
           RPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G K   VD+FP CVHLVS E E + SE
Sbjct: 4   RPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSE 63

Query: 210 ALEAGRICCNKYLVKTAXR 266
           ALEA RI CNKY+VK+A +
Sbjct: 64  ALEAARIACNKYMVKSAGK 82



 Score =  124 bits (298), Expect = 5e-29
 Identities = 59/86 (68%), Positives = 64/86 (74%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMXSCAGXDRLQTGMRGAFGKPQGTVARVRIGQPXMS 430
           K  GKD FH+R+R+HPFHV+RINKM SCAG DRLQTGMRGAFGK  GT ARV IGQ  +S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQXIXALXRAKFKFPGRQ 508
           VR  D        AL RAKFKFPGRQ
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQ 163


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  127 bits (306), Expect = 5e-30
 Identities = 56/79 (70%), Positives = 64/79 (81%)
 Frame = +3

Query: 30  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKXXTVDDFPLCVHLVSDEYEQLXSE 209
           RPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G K   VD+FP CVHLVS E E + SE
Sbjct: 4   RPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSE 63

Query: 210 ALEAGRICCNKYLVKTAXR 266
           ALEA RI CNKY+VK+A +
Sbjct: 64  ALEAARIACNKYMVKSAGK 82



 Score =  124 bits (298), Expect = 5e-29
 Identities = 59/86 (68%), Positives = 64/86 (74%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMXSCAGXDRLQTGMRGAFGKPQGTVARVRIGQPXMS 430
           K  GKD FH+R+R+HPFHV+RINKM SCAG DRLQTGMRGAFGK  GT ARV IGQ  +S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQXIXALXRAKFKFPGRQ 508
           VR  D        AL RAKFKFPGRQ
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQ 163


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 180  SDEYEQLXSEALEAGRICCNKYLV 251
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At4g24120.1 68417.m03462 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 665

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 246 LVKTAXRISSISA*DF-TLSTLSASIKCXHALXLIGSRLGCVVRLASLRVL*HVFALDSP 422
           L+K+   +S I   DF T      S K   A  +IG+ +GC+V   S  +    F + +P
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527


>At2g30040.1 68415.m03653 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 463

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 410 CEHVLQYPEACQTHHAS 360
           C+ +LQ+P  CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 30  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 134
           R +R  RYC + PYP S      P+ K+   D+GK
Sbjct: 27  RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 96  VPDPKIRIFDLGKKXXTVDDFPL 164
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,414,259
Number of Sequences: 28952
Number of extensions: 196134
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)