Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0211
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 33 0.063
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 30 0.33
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 28 1.4
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 2.4
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 3.1
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 27 3.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 4.1
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 4.1
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 26 5.5
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 5.5
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 7.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 7.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 7.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 9.5
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 25 9.5
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.5
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 9.5
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 32.7 bits (71), Expect = 0.063
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Frame = +1
Query: 157 HNCKKFYFLFLRGYYQFLQFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDN 336
+N K F L+ Q L+ +N+ + S+S L L+QLK + + L KE E+N
Sbjct: 615 YNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNL---LEQLKMTEAEVDSLRKENEEN 671
Query: 337 E----VETLQVIKKN----------TMLKGQLSQLSIEYNEVLETNKKLQNVVDGFDQCS 474
+ ++ +++K N L QLSQL E V + + L + + +
Sbjct: 672 KQVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERH 731
Query: 475 GEYVESL 495
+ ++SL
Sbjct: 732 NDELDSL 738
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/74 (20%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 235 YQSSSSCDQLQMALQ-QLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEY 411
++ +C L+++++ Q+++ +EQ + L +N V T +++ LK + + + Y
Sbjct: 3639 FKQKDNCFTLKLSIERQIRSLQEQLLKTLCSSNENIVGTDEIVVLLKNLKEKHETIRLAY 3698
Query: 412 NEVLETNKKLQNVV 453
+E N+K+ ++
Sbjct: 3699 SESQSINRKVDELI 3712
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 211 QFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQL 390
+FQ + +R Q S+ + ++L REQ Q L+++E E E L+ + K L
Sbjct: 86 KFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILE-SRLQEQRKVAL 144
Query: 391 SQLSIEYNEVLET--NKK 438
+L ++ N++ + NKK
Sbjct: 145 DELELDRNDLKKVLDNKK 162
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/47 (31%), Positives = 32/47 (68%)
Frame = +1
Query: 280 QLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEV 420
+LK++ + +QLL+E+E+ E+E + ++L QLS+L ++ N++
Sbjct: 614 ELKSTENRYRQLLQEKEE-ELEIQKAAVDESLL--QLSKLQLDRNDI 657
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/40 (35%), Positives = 27/40 (67%)
Frame = +1
Query: 205 FLQFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKE 324
F++ ++DD ++ SS + ++L MAL +L + C +LL+E
Sbjct: 244 FIKREDDDGKHISSHAIEKLYMALTKL-SRLGACDKLLEE 282
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 552 LQLEITNLKAQKTQSLYSELIESEPASGTVITTSECD 662
L+ E+ NL+ K Y +L+E+E IT EC+
Sbjct: 143 LEREVENLR--KELDKYKDLVETEAEKRAAITKEECE 177
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 27.1 bits (57), Expect = 3.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +1
Query: 241 SSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEV 420
S+ S +L ++++ ++S ++ + E N E Q+I LK L S+E NEV
Sbjct: 24 SAGSQTKLNFSVRKTRSSSKRSNAAIIEPPKNP-EDSQIIPAVKRLKENLDTESLEQNEV 82
Query: 421 LETNKK-----LQNVVDGFDQC 471
L K L+ V + D C
Sbjct: 83 LPPVKNESVLFLEKVFNAVDIC 104
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 208 LQFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKN 369
LQ + Q+ ++ ++L QQL S ++L +E+ D+ V LQV+K+N
Sbjct: 305 LQEKLTSQQSLYNNVTEELNNNKQQLLISENSLREL-QEKYDSVVSELQVVKEN 357
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.6 bits (56), Expect = 4.1
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 259 QLQMALQQLKTSREQCQQLLKEREDNEVETL--QVIKKNTMLKGQLSQLSIEYNEVLETN 432
QLQ L +L + Q LL E+ED E+ TL Q+ +K ++ + Y + E
Sbjct: 289 QLQNRLDELSEELDVAQDLLTEKED-EIATLKRQIEEKENSSSAFENEENSSYVHLQEDY 347
Query: 433 KKLQNVVDGF 462
LQ D F
Sbjct: 348 AILQAKCDEF 357
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = +1
Query: 307 QQLLKEREDNEVETLQVIKKNTMLKG------QLSQLSIEYNEVLETNKKLQNVVDGFDQ 468
++L K E+ + + V K N + K +L Q++ + +EVL NK+LQ ++D D
Sbjct: 148 ERLKKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLLDHNDL 207
Query: 469 CS 474
S
Sbjct: 208 LS 209
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/72 (25%), Positives = 39/72 (54%)
Frame = +1
Query: 241 SSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEV 420
+S + D+ + L++ + + C + + ++ Q +KNT+L+ QLS L E N+
Sbjct: 56 ASENNDENVINLEEFRQLKRNCDLYQRNLQKLQLLFKQQSQKNTLLEKQLS-LQTELNQ- 113
Query: 421 LETNKKLQNVVD 456
E +K+++ + D
Sbjct: 114 -EKDKRVKILQD 124
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +1
Query: 211 QFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTML 378
QFQ +DQ +++ S ++L + K + + Q L E ++N V +++++ T L
Sbjct: 26 QFQEEDQLRRNNKSSNKLSQNEEDAK-NMDSVVQKLNELQNNVVAFQKLLQEKTPL 80
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 226 DQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQL 399
D R Q + C +L A QQL+ QQ L+E ++++ K N + Q+S+L
Sbjct: 190 DSREQLETKCKELAAAEQQLQELSVHNQQ-LEESIKQVSSSIELEKINAEQRLQISEL 246
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 385 QLSQLSIEYNEVLETNKKLQNVVDGFDQCSGEY 483
+L LS++ +E+L+TN L N D D + E+
Sbjct: 35 ELGALSLKVDEILKTNYNLINPEDVTDSDNNEF 67
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 259 QLQMALQQLKTSREQCQQLLKERED 333
QLQ ++L+ RE+ QQL++ ED
Sbjct: 436 QLQALQEELRVEREERQQLIQMSED 460
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 259 QLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYN-EVLETNK 435
QL+ +++ ++E +KER E + + +K + + +QL+ +Y+ E+L+ +
Sbjct: 607 QLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHEELLDNQQ 666
Query: 436 KLQNV 450
KL ++
Sbjct: 667 KLYDL 671
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 9.5
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +1
Query: 199 YQFLQFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTML 378
YQ +N + + + ++ ++L+ E+CQ L + +E LQ I +N +L
Sbjct: 1105 YQLQATKNKELEAKVKECLNNIKSLTKELENKEEKCQN-LSDASLKYIE-LQEIHENLLL 1162
Query: 379 K-GQLSQLSIEYNEVLETNKKLQNVVDGFDQCSGEY 483
K L +Y + + L++V F + S ++
Sbjct: 1163 KVSDLENYKKKYEGLQLDLEGLKDVDTNFQELSKKH 1198
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 286 KTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQ 396
KT R + ++ E E NE + +KKNT+ + ++ +
Sbjct: 113 KTKRPRARRAANEGEHNESVPAKKVKKNTVKEEEIEK 149
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 579 AQKTQSLYSELIESEPASGTVITTSE-CDIPTIDLTGGDSDSTHS 710
A + YS+ + S ASGT +TSE P + G + T S
Sbjct: 591 ASNSSDYYSQTVSSITASGTTSSTSEIVSTPASNSNTGSLNGTSS 635
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 301 QCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLS---IEYNEVLETNKKLQN 447
Q Q+ + DN + T +++K+ L G+L+ LS I+ + VL + L N
Sbjct: 5 QFQRNIVPTHDNPLTTSEILKRLRDLLGELTSLSQDTIDRDSVLPVARSLVN 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,086
Number of Sequences: 5004
Number of extensions: 57454
Number of successful extensions: 212
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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