Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0211
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0676 - 35460281-35460648,35462097-35462382 41 0.001
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 32 0.61
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204... 31 1.4
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982... 29 3.3
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 4.3
04_04_0199 - 23519597-23520282,23520913-23521471 29 5.7
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 29 5.7
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 29 5.7
03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898 28 7.6
11_01_0782 + 6543906-6544702,6545717-6547850 28 10.0
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 28 10.0
>03_06_0676 - 35460281-35460648,35462097-35462382
Length = 217
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/80 (28%), Positives = 42/80 (52%)
Frame = +1
Query: 208 LQFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQ 387
LQ +N R + S +++ Q++ E ++L E ED+E + L+ L+ Q
Sbjct: 132 LQMENRLFREKEEKSSSEIKKLHQEIAKLNESMKKLKSESEDHERKVLEAEAHVNALQKQ 191
Query: 388 LSQLSIEYNEVLETNKKLQN 447
+L +EY+ +LE N+ LQ+
Sbjct: 192 SEELLLEYDRLLEDNQILQS 211
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 31.9 bits (69), Expect = 0.61
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +1
Query: 256 DQLQMALQQLKTSREQCQQLLKEREDNEVETL----QVIKK-NTMLKGQLSQLSIEYNEV 420
D+ ++ Q+ K S + + + R+ E E L +V+K+ NT L+ +++++ EY+E+
Sbjct: 292 DERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYDEL 351
Query: 421 LETNKKLQNVVD 456
L N L+ ++
Sbjct: 352 LSKNSSLKEKLE 363
>05_01_0266 -
2040555-2040722,2041248-2041349,2041461-2041958,
2042372-2042479,2042559-2042753
Length = 356
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 184 FLRGYYQFLQF--QNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQV 357
FL Y ++Q+ + DD R + S + + + K+++ QC LLKE + + +
Sbjct: 104 FLNNYSNYVQYFHELDDLRSKLSVTQATAEASAASAKSAQSQCLSLLKELNEKDSSLKEH 163
Query: 358 IKKNTMLKGQLSQLSIEYNEVLETNKKLQNVV 453
++ L QL L + + ++L++ V
Sbjct: 164 ERRVNKLGEQLDHLQKDLESREYSQRQLKDEV 195
>07_03_0172 +
14697741-14697869,14697878-14697998,14698134-14698226,
14700888-14700946,14701003-14701599,14702813-14703020,
14703102-14703178,14703263-14703302,14703413-14703473,
14704120-14704189,14705014-14705235
Length = 558
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 567 TNLKAQKTQSLYSELIESEPASGTVITTSECDIPTIDLTGGDSDSTHSSRLIL 725
++L+ +T EL SE +S + E DIP+IDL GG+ D T + RL L
Sbjct: 425 SHLQKYRTARYRPEL--SEGSSEKKAASKE-DIPSIDLKGGNFDLTEALRLQL 474
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 250 SCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTM-LKGQLSQLSIEYNEVLE 426
SC ++ Q+ + + E C+ L ++ +E+E L + +K + +L+ + +
Sbjct: 1045 SCQEVVRLRQEKEAAEEMCEALRSRQDKSELELLDMKQKYQLDFDAMKEKLNFSEEHMEK 1104
Query: 427 TNKKLQNVVDGF 462
K+LQ++ F
Sbjct: 1105 LEKELQDMTHKF 1116
>04_04_0199 - 23519597-23520282,23520913-23521471
Length = 414
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +1
Query: 187 LRGYYQF--LQFQNDDQRYQ-SSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQV 357
LRGY+ + QN++ + D L ++ L+T++E + +++ D E L
Sbjct: 142 LRGYFNLDRSEEQNEENEWSWIPQDGDPLAESMSSLQTTQEALENEMQKLSDLSKE-LGA 200
Query: 358 IKKNTMLKGQLSQLSIEYNEVLETNKKLQNVVDGFDQCS 474
++ + + +S + ++VLETN+K+ ++ ++ S
Sbjct: 201 DNFSSDNRANNAFVSPDEDDVLETNQKMSHLEQKLEEAS 239
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 415 HCIQWRAETTVLST*YFS*LPGVFRPRCLLSLLTVVDTVPVMFSVVEEPFEVGHN 251
HC+ R TV+ + PG ++ +L+ +D PV+ V EEP E HN
Sbjct: 468 HCLTSRDNVTVILVRF---KPGA----AVIPILSDIDEEPVLSDVEEEPHEPQHN 515
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -2
Query: 514 FSQLRVGATQHTHRCTDRSRLQ----HFVISC*SQELHCIQWRAETTVLST*-YFS*LPG 350
F Q+R+ H + +RL+ H ++ +E W A T V + S P
Sbjct: 2015 FCQMRLSEAS-AHLASFSARLKDETSHAQLNSSKEESAMAGWVAVTVVKAADAVLSTCPS 2073
Query: 349 VFRPRCLLSLLTVVD 305
++ RCLL LL VVD
Sbjct: 2074 IYEKRCLLQLLAVVD 2088
>03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898
Length = 247
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 199 YQFLQFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKERE 330
YQ Q Q Q S + Q Q LQQ + ++Q LL+E+E
Sbjct: 130 YQLQQQQQHRQYLHSLNLLQQQQQQLQQQQQQQQQQMMLLQEQE 173
>11_01_0782 + 6543906-6544702,6545717-6547850
Length = 976
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 199 YQFLQFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVI 360
+Q +D+QR +S LQ L + RE+ + LKE E +++ + ++
Sbjct: 137 HQSSPVSSDEQRCSGASDGRNLQADLVGIDLPREELLEHLKEAEPKKLKVISIV 190
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 259 QLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQL 390
QLQ Q + + Q QQLL++++ + + Q + ML+ QL
Sbjct: 876 QLQQEQHQRQLQQRQAQQLLQQQQQQQQQQQQQLILEQMLQQQL 919
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,582
Number of Sequences: 37544
Number of extensions: 309267
Number of successful extensions: 775
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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