Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0211
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68790.1 68414.m07863 expressed protein 36 0.031
At5g41140.1 68418.m05001 expressed protein 33 0.22
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 31 0.68
At4g02710.1 68417.m00366 kinase interacting family protein simil... 30 1.6
At1g15780.1 68414.m01893 expressed protein 30 1.6
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 30 2.1
At5g52280.1 68418.m06488 protein transport protein-related low s... 29 2.7
At3g42680.1 68416.m04438 hypothetical protein 29 2.7
At1g18410.1 68414.m02299 kinesin motor protein-related similar t... 29 2.7
At5g27330.1 68418.m03263 expressed protein 29 3.6
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 29 3.6
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica... 29 3.6
At1g26960.1 68414.m03287 homeobox-leucine zipper protein, putati... 29 3.6
At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.6
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR... 29 4.8
At2g04620.1 68415.m00470 cation efflux family protein potential ... 29 4.8
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 28 6.3
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 28 8.3
At1g61970.1 68414.m06990 mitochondrial transcription termination... 28 8.3
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 35.9 bits (79), Expect = 0.031
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +1
Query: 259 QLQMAL-QQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEVLETNK 435
+LQ L QQ+ +++ + LLKERE+ + + + K+ L + + ++ E NEV E N+
Sbjct: 499 RLQSELKQQIDKVKQEEELLLKEREELKQDKERFEKEWEALDKKRANITREQNEVAEENE 558
Query: 436 KLQNV 450
KL+N+
Sbjct: 559 KLRNL 563
>At5g41140.1 68418.m05001 expressed protein
Length = 983
Score = 33.1 bits (72), Expect = 0.22
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Frame = +1
Query: 247 SSCDQLQMALQQLKTSR-EQCQQLLKEREDN-EVETLQVIKKNTMLKGQLSQLSIEYNEV 420
+S D + Q+ R +Q + +K +E+ E + I+K LK ++ +L + NEV
Sbjct: 833 ASADNITKTEQRSNEDRIKQLEGQIKLKENALEASSKIFIEKEKDLKNRIEELQTKLNEV 892
Query: 421 LETNKKLQNVVDGFDQCSGEYVESLQLSAD*KSNFLRHMI 540
+ +++ + G + + +Y E L LS KS+ L+ ++
Sbjct: 893 SQNSQETDETLQGPEAIAMQYTEVLPLS---KSDNLQDLV 929
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +1
Query: 208 LQFQNDDQ-RYQSSSSC--DQLQMALQQLKTSREQCQQLL-KEREDNEVETLQVIKKNTM 375
LQ DDQ + SC DQL AL Q++ RE+ + L +E+ + E +V+K M
Sbjct: 409 LQKNCDDQTKINGKLSCKVDQLSNALAQVELRREEADKALDEEKRNGEDLKAEVLKSEKM 468
Query: 376 LKGQLSQL 399
+ L +L
Sbjct: 469 VAKTLEEL 476
>At4g02710.1 68417.m00366 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1111
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 259 QLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEVLETNKK 438
+L+ ++LKT E CQ L +E+ E + +NT+L L QL +E +
Sbjct: 577 ELESFRRKLKTFEEACQSLSEEKSCLISENQHNVIENTVLIEWLRQLRLEAVGIATEKTD 636
Query: 439 LQNVVDGF-DQCSGEYVESLQL 501
L+ D+ + E+LQL
Sbjct: 637 LEGKAKTIGDKLTDAETENLQL 658
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 217 QNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKERE 330
Q DQ+ Q Q QM QQL+ ++Q QQ L+ R+
Sbjct: 832 QQQDQQMQLKQQFQQRQMQQQQLQARQQQQQQQLQARQ 869
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +1
Query: 262 LQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEVLETNKKL 441
LQM ++ + ++ LK +D EV+ +++ +KN L+ + +LSI+ + L
Sbjct: 245 LQMKEEEAMNKDTEVERKLKAVQDLEVQVMELKRKNRELQHEKRELSIKLDSAEARIATL 304
Query: 442 QNVVD 456
N+ +
Sbjct: 305 SNMTE 309
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = +1
Query: 286 KTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEVLETNKKLQNVV 453
K +++C E D++ ++ + +L+G+L Q S+EY+E L T +L++ V
Sbjct: 475 KLEQQECSNAEDEYLDSKDIIDELKSQIEILEGKLKQQSLEYSECLITVNELESQV 530
>At3g42680.1 68416.m04438 hypothetical protein
Length = 112
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 214 FQNDDQRY-QSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQL 390
+ N+ ++Y +SSSS LQ L++ ++ + L ERE+ E LQ+ ++ M+ L
Sbjct: 31 YTNEKRKYPKSSSSFTSLQTQLKEANCKMKEQETLQAEREE---EALQIAAEHLMIVKYL 87
Query: 391 S 393
S
Sbjct: 88 S 88
>At1g18410.1 68414.m02299 kinesin motor protein-related similar to
kinesin-related protein GB:AAF24855 GI:6692749 from
[Arabidopsis thaliana]
Length = 1140
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 271 ALQQLKT-SREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEVLETNKKLQN 447
ALQ+L+ S+ Q++LK ++ VE Q+ KK +L +L + Y+EVL N+KL N
Sbjct: 569 ALQELRFYSKSIKQEILKVQDKYTVEFSQLGKK--LL--ELGDAAANYHEVLTENQKLFN 624
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = +1
Query: 220 NDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQL 399
+ ++++Q+ S + + L+Q R+Q + L + ++ E+E ++ K+ T+L+ +L
Sbjct: 46 SSEEKFQNLKSLNAI--LLKQTMEKRQQIESLFQAKDSLEIELVRSGKEKTLLREELCGS 103
Query: 400 SIE 408
S E
Sbjct: 104 SDE 106
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 280 QLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEVLETNKKLQ 444
+++T + ++ E + VE L ++KK +G + + I NE++ N+K++
Sbjct: 1471 KMETLEHEIAKMKIEADQEYVENLCILKKFEEAQGTIREADITVNELVIANEKMR 1525
>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
(5320), 1865-1868 (1997))
Length = 933
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 208 LQFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQ 387
LQFQN S S Q QM QQL ++Q Q ++++ ++ Q + + + Q
Sbjct: 461 LQFQNSPGFSMQSPSLVQPQMLQQQLSQQQQQLSQ--QQQQQQQLSQQQQQQLSQQQQQQ 518
Query: 388 LSQ 396
LSQ
Sbjct: 519 LSQ 521
>At1g26960.1 68414.m03287 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeobox-leucine zipper protein HAT7 (HD-ZIP protein 7)
(HD-ZIP protein ATHB-3 (SP:Q00466| [Arabidopsis
thaliana]; similar to Helianthus annuus gi|349379, and
carrot, gi|1435022. Contains Homeobox domain motif
Length = 255
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 343 ETLQVIKKNTMLKGQLSQLSIEYNEVLET-NKKLQNVVDGFDQCSGEYVESLQLSAD 510
+T Q+ K MLK Q L E NEVL+T N+KLQ V S E +ES+ L+ +
Sbjct: 124 KTKQLEKDYDMLKRQFESLRDE-NEVLQTQNQKLQAQVMALK--SREPIESINLNKE 177
>At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 365
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 253 CDQLQMAL-QQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKG 384
C+ L +A Q + SREQ +++ E+++V L V+K N + KG
Sbjct: 178 CNVLYVAFGSQAEISREQLEEIALGLEESKVNFLWVVKGNEIGKG 222
>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1167
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 258 PTSNGSSTTENITGTVSTTVKRE 326
PT NGSS T +G+VST RE
Sbjct: 1128 PTRNGSSNTTTSSGSVSTNTIRE 1150
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 494 SDSTYSPLH*SKPSTTFCNFLLVSRTSLYSM 402
S S+Y +H SK S +F +L S SLYS+
Sbjct: 46 SSSSYRSIHGSKSSLSFLFLILFSLRSLYSL 76
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Frame = +1
Query: 223 DDQRYQSSSSCDQLQMALQQLKTSREQCQQLLKEREDN---------EVETLQVIKKNTM 375
+DQ + + L+QLKT E C++ LKER+ EVE +KN +
Sbjct: 397 EDQLRDAKIAVGTAGTELKQLKTKIEHCEKELKERKSQLMSKLEEAIEVENELGARKNDV 456
Query: 376 LKGQLSQLSIEYNE 417
+ + SI YNE
Sbjct: 457 EHVKKALESIPYNE 470
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 202 QFLQFQNDDQRYQSSSSCDQLQMALQQLKTSREQCQQ 312
Q+LQ Q+D Q+Y Q+Q QQL+ ++Q QQ
Sbjct: 56 QYLQSQSDAQQYVQRGYPQQIQQQ-QQLQQQQQQQQQ 91
>At1g61970.1 68414.m06990 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Frame = +1
Query: 274 LQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEVLETNKK----L 441
L++ + + C L + +N++ + V+++ M L L I ++ + +K L
Sbjct: 168 LEKSSKNEKLCHSLPQGNLENKIRNVSVLRELGMPHKLLFSLLISDSQPVCGKEKFEETL 227
Query: 442 QNVVD-GFDQCSGEYVESLQL 501
+ VV+ GFD + ++VE+LQ+
Sbjct: 228 KKVVEMGFDPTTSKFVEALQV 248
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,709,605
Number of Sequences: 28952
Number of extensions: 276767
Number of successful extensions: 811
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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