Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0210
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 142 2e-34
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 42 8e-04
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.087
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.61
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 30 1.9
SB_45818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 3.3
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 142 bits (345), Expect = 2e-34
Identities = 81/175 (46%), Positives = 103/175 (58%)
Frame = +2
Query: 254 KTRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQXEKSEKGFLINLIDSPGH 433
+TRFTDTRKDEQDRCITIKSTAIS+++EL E D +IT P + E+GFLINLIDSPGH
Sbjct: 52 ETRFTDTRKDEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGH 109
Query: 434 VDFSSEVTAALRVTDGALXXXXXXXXXXYKLKQYCVRLLPSASSLFCS*TKWTVLFLSSN 613
VDFSSEVTAALRVTDGAL + + + + K L
Sbjct: 110 VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 169
Query: 614 LKLKNYTRRSSVL*KMLTSL*PHITMMVGPMGEVRVDPSKGLWFGFGSGLMGWAF 778
L ++ + + + + + + + GPMG ++V P KG FGSGL GWAF
Sbjct: 170 LDQEDLYQTFARIVESINVIIATYSDEDGPMGNIQVGPEKGT-VAFGSGLHGWAF 223
Score = 88.2 bits (209), Expect = 7e-18
Identities = 48/87 (55%), Positives = 56/87 (64%)
Frame = +1
Query: 520 QTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGG 699
QTETVLRQAIAERIKP+LFMNKMDR YQTF RIVE++NVIIATY+D+ G
Sbjct: 139 QTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIATYSDEDG 198
Query: 700 SHG*GACRP*QRALVWFRVWXHGVGFS 780
G P ++ V F HG F+
Sbjct: 199 PMGNIQVGP-EKGTVAFGSGLHGWAFT 224
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +3
Query: 102 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 224
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSK 41
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +1
Query: 520 QTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 681
QT VLRQA E I+P L +NK+DR + Q+I+E VN I T
Sbjct: 117 QTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 520 QTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVII 675
QT VLRQA E I+P L +NK+DR + Q+I+E V+ +
Sbjct: 47 QTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVSTAV 98
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3
Query: 153 IRNMSVIAHVDHGKSTLTDSLV 218
+RN S++AHVDHGKSTL D L+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLL 1962
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 34.7 bits (76), Expect = 0.087
Identities = 20/85 (23%), Positives = 36/85 (42%)
Frame = +3
Query: 99 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKXXXXXXXXXXXPVSLTRV 278
+ N+ ++ + +MD IRN+++ H+ GK+ D L + V L
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 279 RTNKTVASPLNLRPSLCSSSLKRKI 353
R K NL ++C + + R I
Sbjct: 172 RLLKHAVQE-NLAITICINKIDRLI 195
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = +1
Query: 523 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 690
TE +L+ A+ E + + +NK+DR Y + +++ VN +++ +++
Sbjct: 170 TERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSE 225
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 31.9 bits (69), Expect = 0.61
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 305 IKSTAISMFFELE-EKDLVFITNPDQXEKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 481
IK A S F E+E ++ + T+ +K IN++D+PGH DF+ + L D
Sbjct: 48 IKKGATSDFMEIERQRGISVATSVLAFNYRDKK--INILDTPGHKDFAEDTFRTLTAVDS 105
Query: 482 AL 487
+
Sbjct: 106 VI 107
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 138 DKKRNIRNMSVIAHVDHGKSTLTDSLV 218
D+ + R +I+H D GK+TLT+ L+
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLL 31
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 135 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 224
M K++ N+ VI HVD GKST T L+ K
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYK 30
>SB_45818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 254 KTRFTDTRKDEQDRCITIKS--TAISMFFELEEKDLVFITNPDQXEKSEKG-FLINLIDS 424
KTR + R DE+ RC ++ T + F +E K + T EK K +++N ++S
Sbjct: 127 KTRSSRLRSDEKTRCSRRRTGRTIVLRFERVEAKYMDRTTESSFLEKKNKARYILNTLES 186
Query: 425 P 427
P
Sbjct: 187 P 187
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +3
Query: 162 MSVIAHVDHGKSTLTDSL 215
++++ HVDHGK+TL D+L
Sbjct: 31 VTIMGHVDHGKTTLLDAL 48
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 3.3
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 3/147 (2%)
Frame = -3
Query: 690 IVICGYNDVNIFYNTLERLV*FFSFKLELKKSTVHFVHEQNRLDALGNSLTQYCFS--LY 517
I++CG D N + LE + TV +QN +A G SL ++ S L
Sbjct: 68 IIVCG--DFNARMDNLEDFTDLSNSAFSYPFPTVRNSRDQN-FNAYGKSLAEFYNSNNLI 124
Query: 516 XXXXXXXXXTRAPSVTRSAAVT-SEEKSTCPGESIKLIKKPFSLFSXWSGFVMNTKSFSS 340
+P++ SE+ TC + I KP S FV+ +KS
Sbjct: 125 VLNGVKQGCMLSPTLLNLYVHDLSEQLDTCSTDDINTNGKPLSCLLYADDFVIFSKS-KK 183
Query: 339 SSKNIEMAVDLMVMQRSCSSLRVSVKR 259
SK I ++ S + L+V++K+
Sbjct: 184 DSKTISTRSNIFA---SKTGLKVNIKK 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,174,907
Number of Sequences: 59808
Number of extensions: 483139
Number of successful extensions: 1488
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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