Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0210
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    30   0.021
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    30   0.021
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.037
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.61 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 135 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 224
           M K++   N+ VI HVD GKST T  L+ K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYK 30



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 401 FLINLIDSPGHVDFSSEVTAALRVTDGAL 487
           + + +ID+PGH DF   +       D A+
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQADCAV 113


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 135 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 224
           M K++   N+ VI HVD GKST T  L+ K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYK 30



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 401 FLINLIDSPGHVDFSSEVTAALRVTDGAL 487
           + + +ID+PGH DF   +       D A+
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQADCAV 113


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 162 MSVIAHVDHGKSTLTDSL 215
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 392 EKGFLINLIDSPGHVDFSSEVTAALRVTD 478
           E G  +  +D+PGH  F S       +TD
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITD 218


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 159 NMSVIAHVDHGKSTLTDSL 215
           N+  I HV HGKST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 401 FLINLIDSPGHVDFSSEVTAALRVTDGAL 487
           + + +ID+PGH DF   +       D A+
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQADCAV 40


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 401 FLINLIDSPGHVDFSSEVTAALRVTDGAL 487
           + + +ID+PGH DF   +       D A+
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQADCAV 56


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 320 ISMFFELEEKDLVFITNPDQXEKSEKGFLI 409
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 25  PFSKRTPLLAYGSW-FNRTKI 84
           PF ++T ++ +GSW FN  ++
Sbjct: 159 PFDQQTCIMKFGSWTFNGDQV 179



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 140 VHHPTDLVYREIHH 99
           +HHP   + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 320 ISMFFELEEKDLVFITNPDQXEKSEKGFLI 409
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 25  PFSKRTPLLAYGSW 66
           PF ++T +L +GSW
Sbjct: 161 PFDEQTCVLKFGSW 174


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 25  PFSKRTPLLAYGSW 66
           PF ++T ++ +GSW
Sbjct: 157 PFDEQTCVMKFGSW 170


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 296 CITIKSTAISMFF 334
           C T+K +A+ M+F
Sbjct: 688 CATVKGSAVDMYF 700


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 652  QYAGTSGIVLQLQVG 608
            +Y   SG+V+QLQ G
Sbjct: 1549 EYGAVSGLVVQLQRG 1563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,468
Number of Sequences: 438
Number of extensions: 4296
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)