Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0209
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    28   1.5  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.5  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   5.9  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    25   7.8  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 221 YLITILDTQLYAFTDSLFCTTEGYGGIRDDF 129
           YL +  D +  + +DS +C +EG+    DDF
Sbjct: 151 YLSSENDARYPSVSDSPYCESEGFSSFEDDF 181


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 476 N*QSYIYKHLVTNYIFLSYKKIKTI*NCINSQHVNKLK 363
           N QS  +K  +   + L+ + I +  NCINS++  K+K
Sbjct: 7   NNQSGFFKFYIDTALLLNAEFISSFTNCINSEYNGKVK 44


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/49 (24%), Positives = 30/49 (61%)
 Frame = +3

Query: 84   TANKAAFEKALSIAREIIPNAPIALRCAKQAISEGIQLSIKDGYEIEQK 230
            T  K  F+  +++ + +  + P+A++  +Q +SE IQL++   +++ +K
Sbjct: 2714 TPRKLTFQCFMTLQKSV--SQPLAIKEFQQVLSEAIQLALIKWHQLPEK 2760


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 252  LEYLFRSISVLSHNHP 205
            +E LFR ISV+SHN P
Sbjct: 3607 VELLFRRISVISHNVP 3622


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 470 QSYIYKHLVTNYIFLSYKKIKTI*NCINSQHVNKLKSLNK 351
           +S IY+++V  Y F+  K    + NCI        + +NK
Sbjct: 155 ESRIYEYMVPTYAFVPPKPSSILGNCIMKNSPMPAEPINK 194


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -1

Query: 626 YIFPIIPYRFVCTCTIHIKHHRLLRLSVFTTEYEQSLRCLITDFDCSFI*N*QSYIYKHL 447
           Y+  I+P  F C+ T  IK+   L L+  +  Y      + T++   F  +     YK L
Sbjct: 207 YVVTIVPKIFSCSNTTEIKNLNNLNLTTNSHWYPCGPDVIFTNYSDEFYES-----YKSL 261

Query: 446 VTN 438
           +TN
Sbjct: 262 LTN 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,212
Number of Sequences: 5004
Number of extensions: 49395
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)